Dr. Abhishek Dey

@niperraebareli.edu.in

Ramalingaswami Fellow, Department of Biotechnology
National Institute of Pharmaceutical Education and Research (NIPER)-Raebareli

Dr. Abhishek Dey


               Download Compact PDF  
https://researchid.co/abhishek_dey

RESEARCH INTERESTS

RNA structure and function in gene Regulation and Diseases, RNA-Protein interactions, RNA modifications and Gene Expression, RNA Therapeutics.
25

Scopus Publications

479

Scholar Citations

12

Scholar h-index

17

Scholar i10-index

Scopus Publications

RECENT SCHOLAR PUBLICATIONS

  • Pan-Viral Conformational Landscapes of Frameshifting Elements Reveal Length-Dependent Plasticity and Antisense-Driven Structural Reprogramming
    DA Adhikary Kushal
    BioRxiv , 2026
    2026
  • Unmasking the role of tumor microenvironment in the advanced stage of cancer treatment to mitigate risks during chemotherapy
    A Kumari, N Meher, A Dey, S Awasthi, SA Saraf, N Srivastava
    Biochemical Pharmacology, 117754 , 2026
    2026
  • Breaking resistance: strategies for novel antibacterial therapeutic interventions
    NS Sayani Saha, Saurabh Pratap Singh Rathour, Gokul G Nair, Abhishek Dey
    Molecular Biology Reports 53 (318), 1-25 , 2026
    2026
    Citations: 1
  • RNA nanoparticles: Emerging biomolecular scaffolds for precision diagnostics and targeted therapeutics
    SY Mastoli, SA Saraf, A Dey
    International Journal of Biological Macromolecules, 147854 , 2025
    2025
    Citations: 2
  • Plant Protein Farming, a valuable tool in the production of cost-effective and stable biopharmaceuticals: an overview.
    P Kushwaha, K Pinapati, V Salumuri, A Dey, N Srivastava
    Authorea Preprints , 2025
    2025
  • Current perspectives on gene therapy and its involvement in curing genetic disorders
    AD Shireen Nishad, Dipali Dongare, Sayani Saha, Raskar Dhanashri Anil, Nidhi ...
    Human Genetics , 2025
    2025
  • Interactions of Natural Compounds and Biomolecules with Hepatitis C Virus RNA Untranslated Regions: Exploring Structural Modifications to Advance Pathogenesis Understanding and …
    AD Raskar Dhanashri Anil, Sakshi Y. Mastoli, Dipali Barku Dongare, Aman ...
    Biorxiv , 2025
    2025
  • Spirilloxanthin from Verbesina encelioides Flower Extract has Neuroprotective Benefits in Scopolamine‑Induced Memory Impaired Rats that Resemble Alzheimer’s Disease
    NS Vartika Verma, Lavisha Rao, Monika Chaudhary, Smita Jain, Kishore Kumar ...
    Molecular Neurobiology , 2025
    2025
    Citations: 3
  • Dual-State Emissive and Substituent-Tunable pH-Sensitive Bis-Heterocyclic Fluorescent Probes
    AS Preeti Ashokkumar Chaudhran, Sakshi Y. Mastoli, Abhishek Dey, Shubhini A ...
    The Journal of Organic Chemistry , 2025
    2025
    Citations: 5
  • A Cascade of Conformational Switches in SARS-CoV‑2 Frameshifting: Coregulation by Upstream and Downstream Elements
    TS Samuel Lee, Shuting Yan, Abhishek Dey, Alain Laederach
    Biochemistry , 2025
    2025
    Citations: 7
  • High-throughput sequencing: a breakthrough in molecular diagnosis for precision medicine
    NSAD Dipali Barku Dongare, Shaik Shireen Nishad, Sakshi Y. Mastoli, Shubhini ...
    Functional & Integrative Genomics 25 , 2025
    2025
    Citations: 24
  • An intricate balancing act: Upstream and downstream frameshift co-regulatory elements
    TS Samuel Lee, Shuting Yan, Abhishek Dey, Alain Laederach
    Biorxiv , 2024
    2024
    Citations: 2
  • Harnessing Genetic Code: Futuristic Approach of Next-Generation Sequencing for Sustainable Future
    AD Dipali Barku Dongare , Shaik Shireen Nishad , Sakshi Yellappa Mastoli ...
    preprint.org , 2024
    2024
  • Abolished frameshifting for predicted structure-stabilizing SARS-CoV-2 mutants: Implications to alternative conformations and their statistical structural analyses
    TS Abhishek Dey, Alain Laederach, Shuting Yan
    BiorXiv , 2024
    2024
    Citations: 22
  • Neuroprotective Effects of Carotenoid Rich Verbesina encelioides Flower Extract in Scopolamine Induced Memory Impaired Rats Mimicking Alzheimer’s Disease
    KKP Abhishek Dey * , Nidhi Srivastava * , Swapnil Sharma * , Vartika Verma ...
    Preprints 2024 , 2024
    2024
  • Structural Modifications and Novel Protein-Binding Sites in Pre-miR-675—Explaining Its Regulatory Mechanism in Carcinogenesis
    D Abhishek
    Non-Coding RNA 9 (4) , 2023
    2023
    Citations: 11
  • Comprehensive structural and interactome analysis reveals novel interactions and protein binding sites in miR-675: a non-coding RNA critically involved in multiple diseases
    A Dey
    BioRXIV , 2023
    2023
  • Acknowledgment to the Reviewers of Non‐Coding RNA in 2022
    NCRNAE Office
    Non‐Coding RNA , 2023
    2023
  • Quantitative prediction of variant effects on alternative splicing in MAPT using endogenous pre-messenger RNA structure probing
    J Kumar, L Lackey, JM Waldern, A Dey, AM Mustoe, KM Weeks, ...
    elife 11, e73888 , 2022
    2022
    Citations: 24
  • Sequence and tissue targeting specificity of ZFP36L2 reveals Elavl2 as a novel target with co-regulation potential
    SBVR Ian C Redmon, Matthew Ardizzone, Hilal Hekimoğlu, Breanne M Hatfield ...
    Nucleic Acid Research 50 (7) , 2022
    2022
    Citations: 10

MOST CITED SCHOLAR PUBLICATIONS

  • To Knot or Not to Knot: Multiple Conformations of the SARS-CoV-2 Frameshifting RNA Element
    LA Schlick Tamar, Zhu Qiyao, Dey Abhishek, Jain Swati, Yan Shuting
    Journal of American Chemical Society , 2021
    2021
    Citations: 79
  • Current Perspectives of Telomerase Structure and Function in Eukaryotes with Emerging Views on Telomerase in Human Parasites
    D Abhishek, C Kausik
    International Journal of Molecular Sciences 19 (333), 1-28 , 2018
    2018
    Citations: 66
  • Sequence variation of rare outer membrane protein β-barrel domains in clinical strains provides insights into the evolution of Treponema pallidum subsp. pallidum, the syphilis …
    S Kumar, MJ Caimano, A Anand, A Dey, KL Hawley, ME LeDoyt, ...
    MBio 9 (3), 10.1128/mbio. 01006-18 , 2018
    2018
    Citations: 49
  • Peptide Uptake Is Essential for Borrelia burgdorferi Viability and Involves Structural and Regulatory Complexity of its Oligopeptide Transporter
    AM Groshong, A Dey, I Bezsonova, MJ Caimano, JD Radolf
    MBio 8 (6), 10.1128/mbio. 02047-17 , 2017
    2017
    Citations: 46
  • High-throughput sequencing: a breakthrough in molecular diagnosis for precision medicine
    NSAD Dipali Barku Dongare, Shaik Shireen Nishad, Sakshi Y. Mastoli, Shubhini ...
    Functional & Integrative Genomics 25 , 2025
    2025
    Citations: 24
  • Quantitative prediction of variant effects on alternative splicing in MAPT using endogenous pre-messenger RNA structure probing
    J Kumar, L Lackey, JM Waldern, A Dey, AM Mustoe, KM Weeks, ...
    elife 11, e73888 , 2022
    2022
    Citations: 24
  • Crystal structure of Mycobacterium tuberculosis H37Rv AldR (Rv2779c), a regulator of the ald gene: DNA binding and identification of small molecule inhibitors
    A Dey, S Shree, SK Pandey, RP Tripathi, R Ramachandran
    Journal of Biological Chemistry 291 (23), 11967-11980 , 2016
    2016
    Citations: 23
  • Abolished frameshifting for predicted structure-stabilizing SARS-CoV-2 mutants: Implications to alternative conformations and their statistical structural analyses
    TS Abhishek Dey, Alain Laederach, Shuting Yan
    BiorXiv , 2024
    2024
    Citations: 22
  • Ligand-Induced Structural Transitions, Mutational Analysis, and ‘Open’ Quaternary Structure of the M. tuberculosis Feast/Famine Regulatory Protein (Rv3291c)
    ADRR Tripti Shrivastava
    JOURNAL OF MOLECULAR BIOLOGY 392, 1007-1019 , 2009
    2009
    Citations: 19
  • The major outer sheath protein forms distinct conformers and multimeric complexes in the outer membrane and periplasm of Treponema denticola.
    JDR Robbins Puthenveetil, Sanjiv Kumar, Melissa J. Caimano, Abhishek Dey ...
    Scientific Reports: NPG 7, 13260-13278 , 2017
    2017
    Citations: 17
  • In vivo architecture of the telomerase RNA catalytic core in Trypanosoma brucei
    CK Abhishek Dey, Monroy-Eklund Anais, Klotz Kaitlin, Saha Arpita, Davis ...
    Nucleic Acids Research 49 (21), 12445–12466 , 2021
    2021
    Citations: 16
  • The RNA Structurome in the Asexual Blood Stages of Malaria Pathogen Plasmodium falciparum
    SKKC Diana Renteria Alvarez , Alejandra Ospina, Tiffany Barwell, Bo Zheng ...
    RNA Biology , 2021
    2021
    Citations: 14
  • Structural Modifications and Novel Protein-Binding Sites in Pre-miR-675—Explaining Its Regulatory Mechanism in Carcinogenesis
    D Abhishek
    Non-Coding RNA 9 (4) , 2023
    2023
    Citations: 11
  • Water-Soluble Isatoic Anhydrides: A Platform for RNA-SHAPE Analysis and Protein Bioconjugation
    OCA Fessler AB, Dey A, Garmon CB, Finis DS, Saleh NA, Fowler AJ, Jones DS ...
    Bioconjugate chemistry 29 (9), 3196-3202 , 2018
    2018
    Citations: 11
  • Sequence variation of rare outer membrane protein β-barrel domains in clinical strains provides insights into the evolution of Treponema pallidum subsp. pallidum, the syphilis …
    S Kumar, MJ Caimano, A Anand, A Dey, KL Hawley, ME LeDoyt
    Cited Here , 2018
    2018
    Citations: 11
  • Sequence and tissue targeting specificity of ZFP36L2 reveals Elavl2 as a novel target with co-regulation potential
    SBVR Ian C Redmon, Matthew Ardizzone, Hilal Hekimoğlu, Breanne M Hatfield ...
    Nucleic Acid Research 50 (7) , 2022
    2022
    Citations: 10
  • Cloning, overexpression, purification and preliminary X-ray analysis of a feast/famine regulatory protein (Rv2779c) from Mycobacterium tuberculosis H37Rv
    A Dey, R Ramachandran
    Acta Crystallographica Section F 70, 97-100 , 2014
    2014
    Citations: 10
  • A Cascade of Conformational Switches in SARS-CoV‑2 Frameshifting: Coregulation by Upstream and Downstream Elements
    TS Samuel Lee, Shuting Yan, Abhishek Dey, Alain Laederach
    Biochemistry , 2025
    2025
    Citations: 7
  • Innately Water-Soluble Isatoic Anhydrides with Modulated Reactivities for RNA SHAPE Analysis.
    OCA Fessler AB, Abhishek Dey, Finis DS, Fowler AJ, Chakrabarti K
    Bioconjugate Chemistry 31 (3), 884-888 , 2020
    2020
    Citations: 6
  • Dual-State Emissive and Substituent-Tunable pH-Sensitive Bis-Heterocyclic Fluorescent Probes
    AS Preeti Ashokkumar Chaudhran, Sakshi Y. Mastoli, Abhishek Dey, Shubhini A ...
    The Journal of Organic Chemistry , 2025
    2025
    Citations: 5