Microbiology, Molecular Biology, Computer Science Applications, Polymers and Plastics
22343
Scholar Citations
38
Scholar h-index
50
Scholar i10-index
RECENT SCHOLAR PUBLICATIONS
Patescibacteriota in soil and rhizosphere F Qasemnejad, M Probst, C Rinke European Journal of Soil Biology 129, 103831 , 2026 2026
ICTV Virus Taxonomy Profile: Satyavativiridae 2026 A Prabhu, C Rinke Journal of General Virology 107 (4), 002249 , 2026 2026
ICTV Virus Taxonomy Profile: Krittikaviridae 2026 A Prabhu, C Rinke Journal of General Virology 107 (4), 002239 , 2026 2026 Citations: 1
ICTV Virus Taxonomy Profile: Apasviridae 2026 A Prabhu, C Rinke Journal of General Virology 107 (3), 002230 , 2026 2026 Citations: 1
GTDB release 10: a complete and systematic taxonomy for 715 230 bacterial and 17 245 archaeal genomes DH Parks, PA Chaumeil, AJ Mussig, C Rinke, M Chuvochina, ... Nucleic Acids Research 54 (D1), D743-D754 , 2026 2026 Citations: 53
Thermoaminiphila catenidiffluenda gen. nov., sp. nov.: A novel thermophilic, strictly anaerobic bacterium representing Thermoaminiphilia class nov., a newly described class … EM Prem, M Wunderer, A Mullaymeri, J Zoehrer, A Singh, M Abdelhamid, ... bioRxiv, 2026.04. 13.718153 , 2026 2026
A Hitchhikers Guide to Microbial Single-Cell Omics C Rinke Single-Cell Omics in Microbiome Research: Exploring Microbial Diversity … , 2025 2025
Phylogenomic Analyses Reveal that Panguiarchaeum Is a Clade of Genome-Reduced Asgard Archaea Within the Njordarchaeia WC Huang, M Probst, ZS Hua, LL Szánthó, GJ Szöllősi, TJG Ettema, ... Molecular Biology and Evolution 42 (9), msaf201 , 2025 2025 Citations: 12
Summary of taxonomy changes ratified by the International Committee on Taxonomy of Viruses (ICTV) from the Archaeal Viruses Subcommittee, 2025 M Krupovic, DP Baquero, EA Bignon, A Bize, G Borrel, M Cai, L Chen, ... Journal of General Virology 106 (7), 002117 , 2025 2025 Citations: 2
Metagenomic insights into taxonomic and functional patterns in shallow coastal and deep subseafloor sediments in the Western Pacific J Sun, M Hirai, Y Takaki, PN Evans, T Nunoura, C Rinke Microbial genomics 11 (3), 001351 , 2025 2025 Citations: 4
Single-Cell Omics in Microbiome Research C Rinke, M Džunková 2025
Insights into phylogeny, diversity and functional potential of Poseidoniales viruses A Prabhu, J Zaugg, CX Chan, SJ McIlroy, C Rinke Environmental Microbiology 27 (1), e70017 , 2025 2025 Citations: 7
Proposal of Patescibacterium danicum gen. nov., sp. nov. in the ubiquitous bacterial phylum Patescibacteriota phyl. nov. Z Dutkiewicz, CM Singleton, M Sereika, JC Villada, AJ Mussig, ... ISME communications 5 (1), ycae147 , 2025 2025 Citations: 13
Proposal of Patescibacterium danicum gen. nov., sp. nov. in the ubiquitous ultrasmall bacterial phylum Patescibacteriota phyl. nov. Z Dutkiewicz, CM Singleton, M Sereika, JC Villada, AJ Mussig, ... 2024 Citations: 2
Establishing a Framework for Quantifying the Impacts of Environmental Stress on Marine Microbial Communities M Thomas, H Luter, G Waugh, IIV Vanwonterghem, R Fisher, N Webster, ... SETAC North America 45th Annual Meeting , 2024 2024
Description of Asgardarchaeum abyssi gen. nov. spec. nov., a novel species within the class Asgardarchaeia and phylum Asgardarchaeota in accordance with the SeqCode D Tamarit, S Köstlbacher, KE Appler, K Panagiotou, V De Anda, C Rinke, ... Systematic and Applied Microbiology 47 (4), 126525 , 2024 2024 Citations: 22
Putative genome contamination has minimal impact on the GTDB taxonomy AJ Mussig, PA Chaumeil, M Chuvochina, C Rinke, DH Parks, ... Microbial Genomics 10 (5), 001256 , 2024 2024 Citations: 7
Rendering the metabolic wiring powering wetland soil methane production AM Oliverio, AB Narrowe, JA Villa, C Rinke, DW Hoyt, P Liu, BB McGivern, ... bioRxiv , 2024 2024 Citations: 8
Gene inversion led to the emergence of brackish archaeal heterotrophs in the aftermath of the Cryogenian Snowball Earth L Fan, B Xu, S Chen, Y Liu, F Li, W Xie, A Prabhu, D Zou, R Wan, H Li, ... PNAS nexus 3 (2), pgae057 , 2024 2024 Citations: 10
Machine learning and metagenomics identifies uncharacterized taxa inferred to drive biogeochemical cycles in a subtropical hypereutrophic estuary A Prabhu, S Tule, M Chuvochina, M Bodén, SJ McIlroy, J Zaugg, C Rinke ISME communications 4 (1), ycae067 , 2024 2024 Citations: 7
MOST CITED SCHOLAR PUBLICATIONS
A standardized bacterial taxonomy based on genome phylogeny substantially revises the tree of life DH Parks, M Chuvochina, DW Waite, C Rinke, A Skarshewski, ... Nature biotechnology 36 (10), 996-1004 , 2018 2018 Citations: 3770
Insights into the phylogeny and coding potential of microbial dark matter C Rinke, P Schwientek, A Sczyrba, NN Ivanova, IJ Anderson, JF Cheng, ... Nature 499 (7459), 431-437 , 2013 2013 Citations: 2808
Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea RM Bowers, NC Kyrpides, R Stepanauskas, M Harmon-Smith, D Doud, ... Nature biotechnology 35 (8), 725-731 , 2017 2017 Citations: 2612
GTDB: an ongoing census of bacterial and archaeal diversity through a phylogenetically consistent, rank normalized and complete genome-based taxonomy DH Parks, M Chuvochina, C Rinke, AJ Mussig, PA Chaumeil, ... Nucleic acids research 50 (D1), D785-D794 , 2022 2022 Citations: 2530
Recovery of nearly 8,000 metagenome-assembled genomes substantially expands the tree of life DH Parks, C Rinke, M Chuvochina, PA Chaumeil, BJ Woodcroft, ... Nature microbiology 2 (11), 1533-1542 , 2017 2017 Citations: 2065
A complete domain-to-species taxonomy for Bacteria and Archaea DH Parks, M Chuvochina, PA Chaumeil, C Rinke, AJ Mussig, ... Nature biotechnology 38 (9), 1079-1086 , 2020 2020 Citations: 1642
A genomic catalog of Earth’s microbiomes S Nayfach, S Roux, R Seshadri, D Udwary, N Varghese, F Schulz, D Wu, ... Nature biotechnology 39 (4), 499-509 , 2021 2021 Citations: 1004
An environmental bacterial taxon with a large and distinct metabolic repertoire MC Wilson, T Mori, C Rückert, AR Uria, MJ Helf, K Takada, C Gernert, ... Nature 506 (7486), 58-62 , 2014 2014 Citations: 708
A standardized archaeal taxonomy for the Genome Taxonomy Database C Rinke, M Chuvochina, AJ Mussig, PA Chaumeil, AA Davín, DW Waite, ... Nature microbiology 6 (7), 946-959 , 2021 2021 Citations: 519
Comparative Genomic Analysis of the Class Epsilonproteobacteria and Proposed Reclassification to Epsilonbacteraeota (phyl. nov.) DW Waite, I Vanwonterghem, C Rinke, DH Parks, Y Zhang, K Takai, ... Frontiers in microbiology 8, 682 , 2017 2017 Citations: 489
Microbial dark matter ecogenomics reveals complex synergistic networks in a methanogenic bioreactor MK Nobu, T Narihiro, C Rinke, Y Kamagata, SG Tringe, T Woyke, WT Liu The ISME journal 9 (8), 1710-1722 , 2015 2015 Citations: 457
Obtaining genomes from uncultivated environmental microorganisms using FACS–based single-cell genomics C Rinke, J Lee, N Nath, D Goudeau, B Thompson, N Poulton, E Dmitrieff, ... Nature protocols 9 (5), 1038-1048 , 2014 2014 Citations: 360
A phylogenomic and ecological analysis of the globally abundant Marine Group II archaea ( Ca . Poseidoniales ord. nov.) C Rinke, F Rubino, LF Messer, N Youssef, DH Parks, M Chuvochina, ... The ISME journal 13 (3), 663-675 , 2019 2019 Citations: 202
Decontamination of MDA reagents for single cell whole genome amplification T Woyke, A Sczyrba, J Lee, C Rinke, D Tighe, S Clingenpeel, ... PloS one 6 (10), e26161 , 2011 2011 Citations: 201
Phylogeny and physiology of candidate phylum ‘Atribacteria’(OP9/JS1) inferred from cultivation-independent genomics MK Nobu, JA Dodsworth, SK Murugapiran, C Rinke, EA Gies, G Webster, ... The ISME journal 10 (2), 273-286 , 2016 2016 Citations: 200
Stop codon reassignments in the wild NN Ivanova, P Schwientek, HJ Tripp, C Rinke, A Pati, M Huntemann, ... Science 344 (6186), 909-913 , 2014 2014 Citations: 173
Impact of single-cell genomics and metagenomics on the emerging view of extremophile “microbial dark matter” BP Hedlund, JA Dodsworth, SK Murugapiran, C Rinke, T Woyke Extremophiles 18 (5), 865-875 , 2014 2014 Citations: 168
Single-cell genomics reveals complex carbohydrate degradation patterns in poribacterial symbionts of marine sponges J Kamke, A Sczyrba, N Ivanova, P Schwientek, C Rinke, K Mavromatis, ... The ISME journal 7 (12), 2287-2300 , 2013 2013 Citations: 163
Diverse Marinimicrobia bacteria may mediate coupled biogeochemical cycles along eco-thermodynamic gradients AK Hawley, MK Nobu, JJ Wright, WE Durno, C Morgan-Lang, B Sage, ... Nature Communications 8 (1), 1507 , 2017 2017 Citations: 158
Defining the human gut host–phage network through single-cell viral tagging M Džunková, SJ Low, JN Daly, L Deng, C Rinke, P Hugenholtz Nature Microbiology 4 (12), 2192-2203 , 2019 2019 Citations: 145
