Guilherme Correa de Oliveira

Scopus Publications

De Novo Chromosome-Level Assembly of the Endangered Pilocarpus Microphyllus Highlights Genomic Resources for Conservation and Sustainable Pilocarpine Extraction
Mariane Brom Sobreiro, Leandro Magalhães, Leandro Araújo Argolo, Camila Leitão Nacif, Carlos Eduardo de Araújo Batista, Débora de Morais Cordeiro, Renato Renison Moreira-Oliveira, Guilherme Oliveira, Alexandre Aleixo, Carolina da Silva Carvalho, Cecílio Frois Caldeira, Sibelle Torres Vilaça, Amanda F Vidal
Genome Biology and Evolution, 2026
Pilocarpus microphyllus (jaborandi) is an endangered plant species with significant bioeconomic relevance, as it is the main known source of pilocarpine, an alkaloid widely used in the treatment of glaucoma and other diseases. Here, we present a functionally annotated, haplotype-phased, chromosome-level genome for P. microphyllus, combining PacBio HiFi and Hi-C sequencing. The final genome assembly spans 2.6 Gb anchored into 22 chromosomes across 95 scaffolds, with a scaffold N50 of 120.9 Mb and a BUSCO completeness score of 99.66%. We obtained 28,319 unique protein-coding loci, of which 28,090 were functionally annotated to the RefSeq database. Repetitive sequences constituted 88.98% of the total genome length. This near-T2T genome provides a robust molecular foundation for investigating the pilocarpine biosynthetic pathway and supports future population-level studies, thereby contributing to improved management and conservation strategies.
The complete mitogenome of Amazonian Brachyplatystoma filamentosum and the evolutionary history of body size in the order Siluriformes
Renata Lilian Dantas Cavalcante, Caio Santos Silva, Amanda Ferreira Vidal, Éder Soares Pires, Gisele Lopes Nunes, Luciano Fogaça de Assis Montag, Guilherme Oliveira, Ândrea Ribeiro-dos-Santos, Sidney Santos, Sandro José de Souza, Jorge Estefano de Santana Souza, Tetsu Sakamoto
Scientific Reports, 2025
The order Siluriformes (catfish) is one of the largest groups of fish. Diversity in the body size among its species, which range from a few centimeters to 4 meters, makes Siluriformes an interesting group to investigate the body size evolution. Here, we present the complete mitogenome of Brachyplatystoma filamentosum (Piraíba), the largest Amazonian catfish, to explore the evolutionary history of Siluriformes and their body size dynamics. The Piraíba's mtDNA is 16,566 bp long, with a GC content of 42.21% and a D-loop of 911 bp. Phylogenetic analysis was conducted using protein-coding sequences, tRNAs, and rRNAs from mtDNA of Piraíba and 137 other Siluriformes species. Time-calibrated maximum likelihood trees estimated the origin of the order Siluriformes to be ~118.4 Ma, with the Loricarioidei suborder diversifying first, followed by Diplomystoidei and Siluroidei. The Siluroidei suborder experienced rapid expansion around 94.1 Ma. Evolutionary dynamics revealed 16 positive and 11 negative directional body size changes in Siluriformes, with no global trend toward larger or smaller sizes, and with Piraíba showing a significant size increase (5.65 times over 40.8 Ma). We discuss how biological, ecological and environmental factors could have shaped the evolution of body size in this group.
Decoding pilocarpine biosynthesis and its roles in Pilocarpus microphyllus through a comparative transcriptomics approach
Mariane Brom Sobreiro, Giordano Bruno Soares-Souza, Leandro Magalhães, Débora de Morais Cordeiro, Michele Molina, Santelmo Vasconcelos, Yan Nunes Dias, Renato R. Moreira-Oliveira, Markus Gastauer, Silvio Ramos, Guilherme Oliveira, Cecílio Frois Caldeira, Amanda F. Vidal
BMC Plant Biology, 2025
Pilocarpus microphyllus, widely known as jaborandi, faces a decline in its natural population due to unsustainable harvesting for pilocarpine extraction, an imidazole alkaloid with significant pharmacological properties. This study presents the first comparative transcriptomic analysis in jaborandi by investigating gene expression across four different tissues (leaflets, rachis, root, and stem) and exploring potential pathways and functions involved in pilocarpine biosynthesis. The comparisons involving the root had the highest number of DEGs, including root vs. leaflets, rachis vs. root, and stem vs. root. In contrast, no DEGs were identified in the comparison between stem and leaflets. We observed that the root exhibited the most diverse functional profile, including an abundance of TFs involved in alkaloid biosynthesis. Functional enrichment analysis of root-overexpressed genes revealed associations with cell transport, regulatory processes, and defense responses. In contrast, aerial tissues exhibited enrichment for photosynthesis and oxidative stress response pathways, with antioxidant enzymes highly expressed in the leaflets—the primary site of pilocarpine accumulation in its final form—suggesting a potential link between pilocarpine production and the plant’s antioxidative response. The presence of enzymes potentially involved in pilocarpine biosynthesis in both aerial and root tissues supports the idea that its biosynthesis is a multi-tissue process. This study provides important insights into the metabolic pathways for advancing conservation strategies and promoting sustainable management of this species.
Unveiling the global urban virome through wastewater metagenomics
Nathalie Worp, David F. Nieuwenhuijse, Ray W. Izquierdo-Lara, Claudia M. E. Schapendonk, Christian Brinch, Emilie Egholm Bruun Jensen, Patrick Munk, Rene S. Hendriksen, , Frederik Duus Møller, Thomas N. Petersen, Jette S. Kjeldgaard, Christina Aaby Svendsen, Artan Bego, Pablo Power, Catherine Rees, Dionisia Lambrinidis, Elizabeth Heather Jakobsen Neilson, Karen Gibb, Kris Coventry, Peter Collignon, Susan Cassar, Franz Allerberger, Anowara Begum, Zenat Zebin Hossain, Carlon Worrell, Olivier Vandenberg, Ilse Pieters, Dougnon Tamègnon Victorien, Angela Daniela Salazar Gutierrez, Freddy Soria, Vesna Rudić Grujić, Nataša Mazalica, Teddie O. Rahube, Carlos Alberto Tagliati, Dalia Rodrigues, Guilherme Oliveira, Larissa Camila Ribeiro de Souza, Ivan Ivanov, Bonkoungou Isidore Juste, Traoré Oumar, Thet Sopheak, Yith Vuthy, Antoinette Ngandjio, Ariane Nzouankeu, Ziem A. Abah Jacques Olivier, Christopher K. Yost, Pratik Kumar, Satinder Kaur Brar, Djim-Adjim Tabo, Aiko D. Adell, Esteban Paredes-Osses, Maria Cristina Martinez, Sara Cuadros-Orellana, Changwen Ke, Huanying Zheng, Li Baisheng, Lok Ting Lau, Teresa Chung, Xiaoyang Jiao, Yongjie Yu, Zhao JiaYong, Johan F. Bernal Morales, Maria Fernanda Valencia, Pilar Donado-Godoy, Kalpy Julien Coulibaly, Jasna Hrenovic, Matijana Jergović, Renáta Karpíšková, Zozo Nyarukweba Deogratias, Bodil Elsborg, Lisbeth Truelstrup Hansen, Pernille Erland Jensen, Mohamed Abouelnaga, Mohamed Fathy Salem, Marliin Koolmeister, Mengistu Legesse, Tadesse Eguale, Annamari Heikinheimo, Soizick Le Guyader, Julien Schaeffer, Jose Eduardo Villacis, Bakary Sanneh, Lile Malania, Andreas Nitsche, Annika Brinkmann, Sara Schubert, Sina Hesse, Thomas U. Berendonk, Courage Kosi Setsoafia Saba, Jibril Mohammed, Patrick Kwame Feglo, Regina Ama Banu, Charalampos Kotzamanidis, Efthymios Lytras, Sergio A. Lickes, Bela Kocsis, Norbert Solymosi, Thorunn R. Thorsteinsdottir, Abdulla Mohamed Hatha, Mamatha Ballal, Sohan Rodney Bangera, Fereshteh Fani, Masoud Alebouyeh, Dearbhaile Morris, Louise O’Connor, Martin Cormican, Jacob Moran-Gilad, Antonio Battisti, Elena Lavinia Diaconu, Gianluca Corno, Andrea Di Cesare, Patricia Alba, Junzo Hisatsune, Liansheng Yu, Makoto Kuroda, Motoyuki Sugai, Shizuo Kayama, Zeinegul Shakenova, Ciira Kiiyukia, Eric Ng’eno, Lul Raka, Kazi Jamil, Saja Adel Fakhraldeen, Tareq Alaati, Aivars Bērziņš, Jeļena Avsejenko, Kristina Kokina, Madara Streikisa, Vadims Bartkevics, Ghassan M. Matar, Ziad Daoud, Asta Pereckienė, Ceslova Butrimaite-Ambrozeviciene, Christian Penny, Alexandra Bastaraud, Tiavina Rasolofoarison, Jean-Marc Collard, Luc Hervé Samison, Mala Rakoto Andrianarivelo, Daniel Lawadi Banda, Arshana Amin, Heraa Rajandas, Sivachandran Parimannan, David Spiteri, Malcolm Vella Haber, Sunita J. Santchurn, Aleksandar Vujacic, Dijana Djurovic, Brahim Bouchrif, Bouchra Karraouan, Delfino Carlos Vubil, Pushkar Pal, Heike Schmitt, Mark van Passel, Gert-Jan Jeunen, Neil Gemmell, Stephen T. Chambers, Fania Perez Mendoza, Jorge Huete-Pιrez, Samuel Vilchez, Akeem Olayiwola Ahmed, Ibrahim Raufu Adisa, Ismail Ayoade Odetokun, Kayode Fashae, Anne-Marie Sørgaard, Astrid Louise Wester, Pia Ryrfors, Rune Holmstad, Mashkoor Mohsin, Rumina Hasan, Sadia Shakoor, Natalie Weiler Gustafson, Claudia Huber Schill, Maria Luz Zamudio Rojas, Jorge Echevarria Velasquez, Bonifacio B. Magtibay, Kris Catangcatang, Ruby Sibulo, Felipe Campos Yauce, Dariusz Wasyl, Celia Manaia, Jaqueline Rocha, Jose Martins, Pedro Álvaro, Doris Di Yoong Wen, Hanseob Shin, Hor-Gil Hur, Sukhwan Yoon, Golubinka Bosevska, Mihail Kochubovski, Radu Cojocaru, Olga Burduniuc, Pei-Ying Hong, Meghan Rose Perry, Amy Gassama, Vladimir Radosavljevic, Moon Y. F. Tay, Rogelio Zuniga-Montanez, Stefan Wuertz, Dagmar Gavačová, Katarína Pastuchová, Peter Truska, Marija Trkov, Karen Keddy, Kerneels Esterhuyse, Min Joon Song, Marcos Quintela-Baluja, Mariano Gomez Lopez, Marta Cerdà-Cuéllar, R. R. D. P. Perera, N. K. B. K. R. G. W. Bandara, H. I. Premasiri, Sujatha Pathirage, Kareem Charlemagne, Carolin Rutgersson, Leif Norrgren, Stefan Örn, Renate Boss, Tanja Van der Heijden, Yu-Ping Hong, Happiness Houka Kumburu, Robinson Hammerthon Mdegela, Yaovi Mahuton Gildas Hounmanou, Kaknokrat Chonsin, Orasa Suthienkul, Visanu Thamlikitkul, Ana Maria de Roda Husman, Bawimodom Bidjada, Berthe-Marie Njanpop-Lafourcade, Somtinda Christelle Nikiema-Pessinaba, Belkis Levent, Cemil Kurekci, Francis Ejobi, John Bosco Kalule, Jens Thomsen, Ouidiane Obaidi, Laila Mohamed Jassim, Andrew Moore, Anne Leonard, David W. Graham, Joshua T. Bunce, Lihong Zhang, William H. Gaze, Brett Lefor, Drew Capone, Emanuele Sozzi, Joe Brown, John Scott Meschke, Mark D. Sobsey, Michael Davis, Nicola Koren Beck, Pardi Sukapanpatharam, Phuong Truong, Ronald Lilienthal, Sanghoon Kang, Thomas E. Wittum, Natalia Rigamonti, Patricia Baklayan, Chinh Dang Van, Doan Minh Nguyen Tran, Nguyen Do Phuc, Geoffrey Kwenda, Bram van Bunnik, Mark Woolhouse, Fanny Berglund, D. G. Joakim Larsson, Frank Aarestrup, Bas B. Oude Munnink, Marion P. G. Koopmans, Miranda de Graaf
Nature Communications, 2025
Understanding global viral dynamics is critical for public health. Traditional surveillance focuses on individual pathogens and symptomatic cases, which may miss asymptomatic infections or newly emerging viruses, delaying detection and response. Wastewater-based epidemiology has been used to track pathogens through targeted molecular assays, but its reliance on predefined targets limits detection of the full viral spectrum. Here, we analyse longitudinal wastewater samples from 62 cities across six continents (2017-2019) using metagenomics and capture-based sequencing with probes targeting viruses associated with gastrointestinal disease. We detect over 2500 viral species spanning 122 families, many with human, animal, or plant health relevance. The bacteriophage family Microviridae and plant virus family Virgaviridae dominate the metagenomic dataset, while Astroviridae and Picornaviridae prevail in the capture-based sequence dataset. Virus distributions are broadly similar across continents at the family and genus levels, yet distinct city-level fingerprints reveal geographical and temporal variation, enabling spatiotemporal surveillance of viruses such as astroviruses and enteroviruses. Global wastewater-based epidemiology enables early detection of emerging viruses, including Echovirus 30 in Europe and Tomato brown rugose fruit virus. These findings highlight the potential of wastewater sequencing for the early detection of emerging viruses and population-wide virome monitoring across diverse hosts.
Invasive giant river prawns as opportunistic, generalist predators in the Amazon Delta: Insights from metabarcoding
Aisha Carolina Cei, Dalila Costa Silva, Alan Erik Souza Rodrigues, Silvana Melo Sviggum, Fabricio dos Anjos Santa Rosa, Rasna Figueiredo Martins, João Bráullio de Luna Sales, Jarl Andreas Anmarkrud, Hugo de Boer, Guilherme Correa Oliveira, Quentin Mauvisseau, Jussara Moretto Martinelli‐Lemos, Jonathan Stuart Ready
Ecosphere, 2025
Invasive species alter habitats and biological communities. The giant river prawn Macrobrachium rosenbergii (de Man 1879) was introduced to Brazil for aquaculture, and invasive populations have established in the Amazon Delta region where they are believed to pose a risk to the native aquatic fauna. To assess potential impacts, we performed dietary metabarcoding using generalist COI primers on 105 stomach contents collected from prawns from the southern Amazon Delta. Overall, M. rosenbergii presents an opportunistic and generalist diet that reflects the dominant aquatic and terrestrial fauna of the region, including the orders Diptera, Characiformes, and Lepidoptera as dominant dietary items in terms of both frequency of occurrence and richness. One unidentified congeneric species was identified in the diet, indicating the potential for negative effects on the native prawn fauna. Additionally, while there is a general overlap in the diet for all categories of sex and reproductive phase, smaller immature individuals and molted females showed reduced diversity in their diet, suggesting limitations in prey handling or access. We conclude that dietary metabarcoding of opportunistic generalists and/or detritivores appears to be a potentially useful tool for monitoring biodiversity as well as understanding their role in the food web.
Analysis of the Entire Mitogenome of the Threatened Freshwater Stingray Potamotrygon leopoldi (Myliobatiformes: Potamotrygonidae) and Comprehensive Phylogenetic Assessment in the Xingu River, Brazilian Amazon
Sávio L. M. Guerreiro, Amanda F. Vidal, Caio S. Silva, Giovanna C. Cavalcante, Leandro Magalhães, Daniel H. F. Gomes, Júlio César da Silva Filho, Jorge E. S. de Souza, Éder Pires, Guilherme Oliveira, Debora Sayumi Doami Melo, André Luiz Alves de Sá, Igor Hamoy, Ândrea Ribeiro-dos-Santos, Sidney E. B. Santos
International Journal of Molecular Sciences, 2025
The present study characterizes the complete mitochondrial genome of Potamotrygon leopoldi, commonly referred to as the “white blotched stingray”, a member of the Potamotrygonidae family that are a group of stingrays that live exclusively in freshwater environments. Potamotrygon leopoldi, endemic to the Xingu River in the Amazon region, are exploited by commercial fisheries for food and commonly exploited by the ornamental industry, and this has a significant impact on the populations. Here, newly assembled PacBio long-read sequencing assesses the complete mitogenome of P. leopoldi and performs a comparative investigation into the evolutionary connections to other extant taxa of elasmobranchs. The mitogenome has 17,504 bp, containing 13 protein-coding, 22 tRNA, and 2 rRNA genes. The mitogenome comprises A: 32.32%, T: 24.41%, C: 12.84%, and G: 30.42%, with an AT content of 56.73%. The values of AT and GC skewness were 0.13 and −0.40, respectively. Our phylogenetic analyses with mitogenome sequences of 40 elasmobranch species support the monophyly for the Potamotrygonidae family and indicate a close relationship to the Dasyatidae family and a sister relationship with Potamotrygon orbignyi and Potamotrygon falkneri. We also detected various amino acid sites in positive selection exclusively in P. leopoldi. This extensive comparative mitogenomic investigation offers novel and significant insights into the evolutionary lineage of neotropical freshwater stingrays and their closely related taxa. It is an indispensable resource for facilitating ongoing and prospective investigations into the molecular evolution of elasmobranchs.
Measuring the natural capital of Amazonian forests: A case study of the National Forest of Carajás, Brazil
Tereza Cristina Giannini, Caroline Oliveira Andrino, Rafael Gomes Barbosa-Silva, José A. Bitencourt, Rafael C. Borges, Renata R. Brito, Rosane Cavalcante, Claudia P.W. Costa, Sidnei Dantas, Markus Gastauer, Vitor F. Gomes, Ulysses M. Maia, Felipe Martello, Leonardo Miranda, Sâmia Nunes, Guilherme Oliveira, Amanda Paracampo, Paulo R. Pontes, Silvio Ramos, José E. Santos, Orlando T. Silveira, Renata Tedeschi, Rafael B. Valadares, Pedro Viana, Jacobus Biesmeijer
Ecosystem Services, 2025
We propose an innovative approach that links nature and people to assess the natural capital of tropical forests in the Amazon. Our study location is a protected area inside Eastern Amazon forest, where we defined 14 sampling points and analyzed ten components, which encompass the maintenance of standing forests (nature to itself) and the provision of ecosystem services (nature to people). Five components were used to assess ecosystem functions and five components were used to assess ecosystem services. As for ecosystem functions, we registered 467 species of animals (122 bees, 53 butterflies, 292 birds) and 418 plant species, and a mean interaction diversity of 2.8 (from 480 bee-plant interactions). Based on functional traits, we found that at least 83 % of species must be preserved to guarantee resilience, and that functional diversity relies on 60 % of non-replaceable species. Eleven per cent of birds and 9 % of plants are endangered. As for ecosystem services, carbon storage in soil and vegetation is 41.6 and 173 MgC/ha (on average), respectively. One to four uses by Amazonian traditional communities were reported on 42 % of plants. In the vicinities of the protected area, we found that 66 % of crops (13 from 20 crop species) depend on pollinating bees, and the value of annual crop pollination service is US$4.5Mi. Regarding water protection and local climate regulation, data modelling has shown that the presence of protected forests leads to a 21 % increase in evapotranspiration and a decrease in temperature of 0.4 °C. Our framework showed a clear link between the megadiversity found in Amazonian tropical forest and the robust benefits provided to human welfare, highlighting forest conservation as a key element for sustainable development. Advances in understanding the value of forests stimulate significant new opportunities to improve the effectiveness and efficiency of forest conservation and management policies and decision-making.
DNA Metabarcoding as a Complementary Approach to Traditional Surveys for Monitoring the Plant Diversity in the Amazon canga
Vitória C. C. Martins, Gisele L. Nunes, Renato R. M. Oliveira, Markus Gastauer, Guilherme Oliveira, Santelmo Vasconcelos
Environmental DNA, 2025
The canga of the Serra dos Carajás in the Eastern Amazon (Pará, Brazil) has one of the largest iron ore deposits on the planet and is home to a community of endemic and rare plants. However, conservation and monitoring programs in megadiverse areas, as in the case of the region, are often hampered by the lack of knowledge of the species that inhabit these ecosystems. In this scenario, the comprehensive DNA barcoding effort directed to the complete flora of the canga in the Brazilian Amazon has enabled the implementation of DNA metabarcoding approaches for species monitoring. Here, we assessed the potential of implementing DNA metabarcoding with environmental DNA (eDNA) in future surveys of plant species of the ironstone outcrops of the Serra dos Carajás. After extracting eDNA from soil samples, the nuclear ITS2 region was amplified and sequenced using the Illumina MiSeq platform. With the metabarcoding analyses, we detected 95 species from 72 genera and 35 families, revealing a higher overall diversity than the morphology‐based approach, including taxa that were not identified in a traditional floristic survey. The fact that DNA metabarcoding results mostly agreed with the data from the floristic survey indicates the robustness of the molecular approach to be used in monitoring studies of plant diversity in the region. Additionally, we discuss the relevance of our results to guide the development of broader applications of eDNA‐based biodiversity monitoring in species‐rich environments such as the Serra dos Carajás.
Cave-dwelling bats of Carajás National Forest: New cytogenetic data of threatened species
Jéssica Barata da Silva, Thayse Cristine Melo Benathar, Ramerson Lucas Ferreira Azevedo, Leonardo Carreira Trevelin, Cleusa Yoshiko Nagamachi, Guilherme Oliveira, Julio Cesar Pieczarka
Ecology and Evolution, 2025
In Brazil, bat species that use caves as shelters are constantly susceptible to anthropic impacts. Of the 181 species of bats in Brazil, 81 are recorded in caves, 13 of which are considered essentially cave dwellers. The Carajás National Forest Conservation Unit, located in the southeastern region of Pará, serves as a refuge for these species, among others. The present work sought to reveal the chromosomal diversity of bats in six caves of the Carajás National Forest. Cytogenetic analyses were carried out for some species as an additional tool for taxonomic identification. We present here the conventional karyotype of eight species, five being described for the first time in Brazilian specimens. We also described for the first time the karyotypes of Natalus macrourus and Peropteryx kappleri. These findings may be helpful to support conservation guidelines, and for the knowledge of these species' biodiversity, evolutionary history, and to support genome sequencing efforts.
Almost two hundred years of monotypy and a poorly known life history: multiple lineages of Furipterus (Chiroptera: Furipteridae) were hidden by rocks
Ligiane M. Moras, Carla C. Nobre, Santelmo Vasconcelos, Guilherme S. T. Garbino, Érica M. S. de Souza, Fabrício R. Santos, Guilherme Oliveira, Valéria da C. Tavares
Mammalian Biology, 2025
The Thumbless bat Furipterus horrens (Cuvier, 1828) (Chiroptera: Furipteridae) is a tiny insectivorous bat species that has not undergone comprehensive systematic revisions, as taxonomic studies about this species are only represented by the middle XIX century description of F. caerulescens Tomes, 1856. Concurrently there also has been no assessment on the genetic diversity within the species along its distribution. We analyzed patterns of mitochondrial genetic variation of F. horrens under the prediction that structured populations could be associated with the naturally patchy distribution of these bats’ roosts. Our data revealed highly divergent lineages, with low haplotype sharing and indicating well-structured populations. For the phylogeny we recovered well-supported clades, and the outcome of species limits tests suggests the split of F. horrens into a complex of four to six putative species. Lineages recovered were mostly allopatric along South America, except for two sympatric populations from the low-medium Xingu River. Based on the outstandingly high genetic discontinuities found for Furipterus, we hypothesize that historical metapopulational arrangements composed of spatially structured populations with different degrees of isolation resulted in limited gene flow for at least part of the lineages found. The observed results may reflect a female-inherited variation at least partially related to yet unknown biological traits of Furipterus such as social structure, female philopatry or other biological characteristics. Whether part of these lineages represent separate full species needs further examination based on independent datasets (morphology and nuclear data) but it is now clear that Furipterus horrens is composed of distinct populations likely containing more than one species, a diversity that has remained virtually overlooked for over two centuries.
Do you have enough space? Habitat selection of insectivorous cave-dwelling bats in fragmented landscapes of Eastern Amazon
Valéria da C. Tavares, Mariane S. Ribeiro, Xavier Prous, Alice A. Notini, Nathalia Y. Kaku-Oliveira, Leandro M. D. Maciel, Sérgio Sales, Juliana M. Longo, Flávia M. Evangelista, Lucas Rabelo, Iuri V. Brandi, Santelmo S. Vasconcelos, Sonia S. Talamoni, Guilherme Oliveira, Leonardo C. Trevelin
Plos One, 2025
Multiomics analysis reveals microbial diversity and activity through spontaneous fermentation of Theobroma cacao
Ynara da Costa Fonseca, Celina Eugenio Bahule, Hector Herrera, Luiza Helena da Silva Martins, Alessandra Santos Lopes, Juliana Silva Cassoli, Felipe Costa Trindade, Isa Rebecca Chagas da Costa, Paulo Henrique de Oliveira Costa, Guilherme Oliveira, Rafael Borges da Silva Valadares
Heliyon, 2024
New mitochondrial genomes of three whip spider species from the Amazon (Arachnida, Amblypygi) with phylogenetic relationships and comparative analysis
Acácio Freitas Nogueira, Eder S. Pires, Guilherme Oliveira, Leonardo Carreira Trevelin, Santelmo Vasconcelos
Scientific Reports, 2024
A reference genome for the Harpy Eagle reveals steady demographic decline and chromosomal rearrangements in the origin of Accipitriformes
Lucas Eduardo Costa Canesin, Sibelle T. Vilaça, Renato R. M. Oliveira, Farooq Al-Ajli, Alan Tracey, Ying Sims, Giulio Formenti, Olivier Fedrigo, Aureo Banhos, Tania M. Sanaiotti, Izeni P. Farias, Erich D. Jarvis, Guilherme Oliveira, Tomas Hrbek, Vera Solferini, Alexandre Aleixo
Scientific Reports, 2024
Leveraging genomes to support conservation and bioeconomy policies in a megadiverse country
Sibelle Torres Vilaça, Amanda F. Vidal, Ana Carolina D’Oliveira Pavan, Bruno Marques Silva, Carolina S. Carvalho, Cintia Povill, Danielle Luna-Lucena, Gisele L. Nunes, Henrique Vieira Figueiró, Izabela Santos Mendes, Jose Augusto P. Bittencourt, Lara Gomes Côrtes, Lucas Eduardo Costa Canesin, Renato R.M. Oliveira, Roberta P. Damasceno, Santelmo Vasconcelos, Silvia B. Barreto, Valeria Tavares, Guilherme Oliveira, Amely Branquinho Martins, Alexandre Aleixo
Cell Genomics, 2024
Mapping soil organic carbon stock through remote sensing tools for monitoring iron minelands under rehabilitation in the Amazon
Ediu Carlos da Silva Junior, Paula Godinho Ribeiro, Gabriel Caixeta Martins, Diogo Corrêa Santos, Markus Gastauer, Rafael Borges da Silva Valadares, Cecílio Frois Caldeira Júnior, Pedro Walfir Martins de Souza-Filho, Guilherme Oliveira, Wilson da Rocha Nascimento Júnior, Silvio Junio Ramos
Environment Development and Sustainability, 2024
Global assessment of aquatic Isoëtes species ecology
Mattia M. Azzella, Alice Dalla Vecchia, Thomas Abeli, Janne Alahuhta, Victor B. Amoroso, Enric Ballesteros, Vincent Bertrin, Daniel Brunton, Alexander A. Bobrov, Cecilio Caldeira, Simona Ceschin, Elena V. Chemeris, Martina Čtvrtlíková, Mary de Winton, Esperança Gacia, Oleg G. Grishutkin, Deborah Hofstra, Daniella Ivanova, Maria O. Ivanova, Nikita K. Konotop, Danelle M. Larson, Sara Magrini, Marit Mjelde, Olga A. Mochalova, Guilherme Oliveira, Ole Pedersen, Jovani B. de S. Pereira, Cristina Ribaudo, María Inmaculada Romero Buján, Angelo Troìa, Yulia S. Vinogradova, Polina A. Volkova, Daniel Basílio Zandonadi, Nadezhda V. Zueva, Rossano Bolpagni
Freshwater Biology, 2024
Complete mitochondrial genomes of three vulnerable cave bat species and their phylogenetic relationships within the order Chiroptera
Michele Molina, Guilherme Oliveira, Renato R. M. Oliveira, Gisele L. Nunes, Eder S. Pires, Xavier Prous, Mariane Ribeiro, Santelmo Vasconcelos
Plos One, 2024
Before it’s too late: priority areas for conservation of cryptic and threatened species of troglobitic arthropods in the Brazilian semiarid
Diego de Medeiros Bento, Rodrigo Lopes Ferreira, Santelmo Vasconcelos, Jamily Lorena Ramos de Lima, Guilherme Oliveira, Tiago Castro Silva, Sergio Maia Queiroz Lima
Biodiversity and Conservation, 2024
New taxonomic insights for Brazilian Syrbatus Reitter (Coleoptera: Staphylinidae: Pselaphinae), including three new species and their mitochondrial genomes
Angélico Asenjo, Marcely Valois, Robson de Almeida Zampaulo, Michele Molina, Renato R.M. Oliveira, Guilherme Oliveira, Santelmo Vasconcelos
Peerj, 2024
Organellar-genome analyses from the lycophyte genus Isoetes L. show one of the highest frequencies of RNA editing in land plants
Jovani Bernardino de Souza Pereira, Renato Renison Moreira Oliveira, Santelmo Vasconcelos, Mariana Costa Dias, Cecı́lio Frois Caldeira, Dietmar Quandt, Guilherme Oliveira, Jefferson Prado
Frontiers in Plant Science, 2024
Native Plant Species as an Alternative to Rehabilitate Iron Ore Waste Piles in Carajás Mineral Province, Brazil
Yorranna Kelly Rossy da Silva, Gabriel Caixeta Martins, Rafael Silva Guedes, Paula Godinho Ribeiro, Markus Gastauer, Ediu Carlos da Silva Junior, Cecílio Frois Caldeira, Guilherme Oliveira, Pedro Walfir Martins Souza Filho, Mario Luis Oliveira, Silvio Junio Ramos
Communications in Soil Science and Plant Analysis, 2024
Retrieving biodiversity data from multiple sources: making secondary data standardised and accessible
Nubia Marques, Carla Danielle de Melo Soares, Daniel de Melo Casali, Erick Guimarães, Fernanda Fava, João Marcelo da Silva Abreu, Ligiane Moras, Letícia Gomes da Silva, Raphael Matias, Rafael Leandro de Assis, Rafael Fraga, Sara Almeida, Vanessa Lopes, Verônica Oliveira, Rafaela Missagia, Eduardo Carvalho, Nikolas Carneiro, Ronnie Alves, Pedro Souza-Filho, Guilherme Oliveira, Margarida Miranda, Valéria da Cunha Tavares
Biodiversity Data Journal, 2024
Caves as wildlife refuges in degraded landscapes in the Brazilian Amazon
Rafael de Fraga, Valéria Tavares, Matheus Henrique Simões, Xavier Prous, Cesare Girolamo-Neto, Iuri V. Brandi, Guilherme Oliveira, Leonardo C. Trevelin
Scientific Reports, 2023
Author Correction: Genomic analysis of sewage from 101 countries reveals global landscape of antimicrobial resistance (Nature Communications, (2022), 13, 1, (7251), 10.1038/s41467-022-34312-7)
Patrick Munk, Christian Brinch, Frederik Duus Møller, Thomas N. Petersen, Rene S. Hendriksen, Anne Mette Seyfarth, Jette S. Kjeldgaard, Christina Aaby Svendsen, Bram van Bunnik, Fanny Berglund, Artan Bego, Pablo Power, Catherine Rees, Dionisia Lambrinidis, Elizabeth Heather Jakobsen Neilson, Karen Gibb, Kris Coventry, Peter Collignon, Susan Cassar, Franz Allerberger, Anowara Begum, Zenat Zebin Hossain, Carlon Worrell, Olivier Vandenberg, Ilse Pieters, Dougnon Tamègnon Victorien, Angela Daniela Salazar Gutierrez, Freddy Soria, Vesna Rudić Grujić, Nataša Mazalica, Teddie O. Rahube, Carlos Alberto Tagliati, Dalia Rodrigues, Guilherme Oliveira, Larissa Camila Ribeiro de Souza, Ivan Ivanov, Bonkoungou Isidore Juste, Traoré Oumar, Thet Sopheak, Yith Vuthy, Antoinette Ngandjio, Ariane Nzouankeu, Ziem A. Abah Jacques Olivier, Christopher K. Yost, Pratik Kumar, Satinder Kaur Brar, Djim-Adjim Tabo, Aiko D. Adell, Esteban Paredes-Osses, Maria Cristina Martinez, Sara Cuadros-Orellana, Changwen Ke, Huanying Zheng, Li Baisheng, Lok Ting Lau, Teresa Chung, Xiaoyang Jiao, Yongjie Yu, Zhao JiaYong, Johan F. Bernal Morales, Maria Fernanda Valencia, Pilar Donado-Godoy, Kalpy Julien Coulibaly, Jasna Hrenovic, Matijana Jergović, Renáta Karpíšková, Zozo Nyarukweba Deogratias, Bodil Elsborg, Lisbeth Truelstrup Hansen, Pernille Erland Jensen, Mohamed Abouelnaga, Mohamed Fathy Salem, Marliin Koolmeister, Mengistu Legesse, Tadesse Eguale, Annamari Heikinheimo, Soizick Le Guyader, Julien Schaeffer, Jose Eduardo Villacis, Bakary Sanneh, Lile Malania, Andreas Nitsche, Annika Brinkmann, Sara Schubert, Sina Hesse, Thomas U. Berendonk, Courage Kosi Setsoafia Saba, Jibril Mohammed, Patrick Kwame Feglo, Regina Ama Banu, Charalampos Kotzamanidis, Efthymios Lytras, Sergio A. Lickes, Bela Kocsis, Norbert Solymosi, Thorunn R. Thorsteinsdottir, Abdulla Mohamed Hatha, Mamatha Ballal, Sohan Rodney Bangera, Fereshteh Fani, Masoud Alebouyeh, Dearbhaile Morris, Louise O’Connor, Martin Cormican, Jacob Moran-Gilad, Antonio Battisti, Elena Lavinia Diaconu, Gianluca Corno, Andrea Di Cesare, Patricia Alba, Junzo Hisatsune, Liansheng Yu, Makoto Kuroda, Motoyuki Sugai, Shizuo Kayama, Zeinegul Shakenova, Ciira Kiiyukia, Eric Ng’eno, Lul Raka, Kazi Jamil, Saja Adel Fakhraldeen, Tareq Alaati, Aivars Bērziņš, Jeļena Avsejenko, Kristina Kokina, Madara Streikisa, Vadims Bartkevics, Ghassan M. Matar, Ziad Daoud, Asta Pereckienė, Ceslova Butrimaite-Ambrozeviciene, Christian Penny, Alexandra Bastaraud, Tiavina Rasolofoarison, Jean-Marc Collard, Luc Hervé Samison, Mala Rakoto Andrianarivelo, Daniel Lawadi Banda, Arshana Amin, Heraa Rajandas, Sivachandran Parimannan, David Spiteri, Malcolm Vella Haber, Sunita J. Santchurn, Aleksandar Vujacic, Dijana Djurovic, Brahim Bouchrif, Bouchra Karraouan, Delfino Carlos Vubil, Pushkar Pal, Heike Schmitt, Mark van Passel, Gert-Jan Jeunen, Neil Gemmell, Stephen T. Chambers, Fania Perez Mendoza, Jorge Huete-Pιrez, Samuel Vilchez, Akeem Olayiwola Ahmed, Ibrahim Raufu Adisa, Ismail Ayoade Odetokun, Kayode Fashae, Anne-Marie Sørgaard, Astrid Louise Wester, Pia Ryrfors, Rune Holmstad, Mashkoor Mohsin, Rumina Hasan, Sadia Shakoor, Natalie Weiler Gustafson, Claudia Huber Schill, Maria Luz Zamudio Rojas, Jorge Echevarria Velasquez, Bonifacio B. Magtibay, Kris Catangcatang, Ruby Sibulo, Felipe Campos Yauce, Dariusz Wasyl, Celia Manaia, Jaqueline Rocha, Jose Martins, Pedro Álvaro, Doris Di Yoong Wen, Hanseob Shin, Hor-Gil Hur, Sukhwan Yoon, Golubinka Bosevska, Mihail Kochubovski, Radu Cojocaru, Olga Burduniuc, Pei-Ying Hong, Meghan Rose Perry, Amy Gassama, Vladimir Radosavljevic, Moon Y. F. Tay, Rogelio Zuniga-Montanez, Stefan Wuertz, Dagmar Gavačová, Katarína Pastuchová, Peter Truska, Marija Trkov, Karen Keddy, Kerneels Esterhuyse, Min Joon Song, Marcos Quintela-Baluja, Mariano Gomez Lopez, Marta Cerdà-Cuéllar, R. R. D. P. Perera, N. K. B. K. R. G. W. Bandara, H. I. Premasiri, Sujatha Pathirage, Kareem Charlemagne, Carolin Rutgersson, Leif Norrgren, Stefan Örn, Renate Boss, Tanja Van der Heijden, Yu-Ping Hong, Happiness Houka Kumburu, Robinson Hammerthon Mdegela, Yaovi Mahuton Gildas Hounmanou, Kaknokrat Chonsin, Orasa Suthienkul, Visanu Thamlikitkul, Ana Maria de Roda Husman, Bawimodom Bidjada, Berthe-Marie Njanpop-Lafourcade, Somtinda Christelle Nikiema-Pessinaba, Belkis Levent, Cemil Kurekci, Francis Ejobi, John Bosco Kalule, Jens Thomsen, Ouidiane Obaidi, Laila Mohamed Jassim, Andrew Moore, Anne Leonard, David W. Graham, Joshua T. Bunce, Lihong Zhang, William H. Gaze, Brett Lefor, Drew Capone, Emanuele Sozzi, Joe Brown, John Scott Meschke, Mark D. Sobsey, Michael Davis, Nicola Koren Beck, Pardi Sukapanpatharam, Phuong Truong, Ronald Lilienthal, Sanghoon Kang, Thomas E. Wittum, Natalia Rigamonti, Patricia Baklayan, Chinh Dang Van, Doan Minh Nguyen Tran, Nguyen Do Phuc, Geoffrey Kwenda, D. G. Joakim Larsson, Marion Koopmans, Mark Woolhouse, Frank M. Aarestrup, and
Nature Communications, 2023
The resilience of the aquatic Isoëtes cangae to terrestrial environment: Insights into molecular and ecophysiological adaptations
Arthur Vinícius de Sant’anna Lopes, Lupis Ribeiro Gomes Neto, Antonio Jesus Dorighetto Cogo, Luigi Pereira Cunha, Cecílio Frois Caldeira, Guilherme Oliveira, Rodrigo Lemes Martins, Francisco de Assis Esteves, Allysson Buraslan Cavalcante, Heitor Monteiro Duarte, Daniel Basílio Zandonadi, Rodrigo Nunes da Fonseca, Mirella Pupo Santos
Aquatic Botany, 2023
Biomass and enzymatic activities of marine bacteria in the presence of multiple metals
J. A. P. Bitencourt, L. P. T. Chequer, C. C. Waite, G. Oliveira, A. M. S. Oliveira, D. C. Pereira, M. A. C. Crapez
Brazilian Journal of Microbiology, 2023
Minimum thresholds of key ecological attributes facilitate the tracking of mineland restoration
Arianne Flexa de Castro, Igor Rodrigues de Assis, Cecílio Frois Caldeira, Silvio Junio Ramos, Renan Rodrigues Coelho, Guilherme Corrêa de Oliveira, Priscila Sanjuan Medeiros-Sarmento, Markus Gastauer
Resources Policy, 2023
DNA metabarcoding reveals compositional and functional differences in fungal communities among Amazonian canga formations
Josiane S. Monteiro, Mateus S. Almeida, Priscila S. Medeiros-Sarmento, Cecílio F. Caldeira, Silvio J. Ramos, Guilherme Oliveira, Rafael B.S. Valadares, Markus Gastauer
Fungal Ecology, 2023
The complete mitochondrial genome and description of a new cryptic Brazilian species of Metopiellus Raffray (Coleoptera: Staphylinidae: Pselaphinae)
Angélico Asenjo, Marcus Paulo Alves de Oliveira, Renato R.M. Oliveira, Eder Soares Pires, Marcely Valois, Guilherme Oliveira, Santelmo Vasconcelos
Peerj, 2023
The Brazilian Atlantic Bushmaster Lachesis (Linnaeus, 1766) Mitogenome With Insights On Snake Evolution And Divergence (Serpentes: Viperidae: Crotalinae)
BRENO HAMDAN, VICTOR C. SEIXAS, GISELE L. NUNES, GUILHERME OLIVEIRA, SANDRO L. BONATTO, AMANDA VIDAL, EDER S. PIRES, RUSSOLINA B. ZINGALI
Anais Da Academia Brasileira De Ciencias, 2023
Traditional taxonomy underestimates the number of species of Bokermannohyla (Amphibia: Anura: Hylidae) diverging in the mountains of southeastern Brazil since the Miocene
Tuliana O. Brunes, Felipe C. S. Pinto, Pedro P. G. Taucce, Marcus Thadeu T. Santos, Luciana B. Nascimento, Daniel C. Carvalho, Guilherme Oliveira, Santelmo Vasconcelos, Felipe S. F. Leite
Systematics and Biodiversity, 2023
Corrigendum: Schistosoma mansoni coactivator associated arginine methyltransferase 1 (SmCARM1) effect on parasite reproduction (Frontiers in Microbiology, (2023), 14, (1079855), 10.3389/fmicb.2023.1079855)
Fernanda Sales Coelho, Sandra Grossi Gava, Luiza Freire Andrade, Juliana Assis Geraldo, Naiara Clemente Tavares, Felipe Miguel Nery Lunkes, Renata Heisler Neves, José Roberto Machado-Silva, Raymond J. Pierce, Guilherme Oliveira, Marina Moraes Mourão
Frontiers in Microbiology, 2023
Schistosoma mansoni coactivator associated arginine methyltransferase 1 (SmCARM1) effect on parasite reproduction
Fernanda Sales Coelho, Sandra Grossi Gava, Luiza Freire Andrade, Juliana Assis Geraldo, Naiara Clemente Tavares, Felipe Miguel Nery Lunkes, Renata Heisler Neves, José Roberto Machado-Silva, Raymond J. Pierce, Guilherme Oliveira, Marina Moraes Mourão
Frontiers in Microbiology, 2023
Bioprospecting for Isoetes cangae Endophytes with Potential to Promote Plant Growth
Danielle Silveira Santos, Paula Veronesi Marinho Pontes, Analy Machado de Oliveira Leite, Aline Lemos Ferreira, Mariana de Souza, Thainá dos Santos Silva Araujo, Henrique Fragoso dos Santos, Guilherme Correa de Oliveira, José Augusto Bitencourt, Allysson Buraslan Cavalcanti, Rodrigo Lemes Martins, Francisco De Assis Esteves
International Journal of Microbiology, 2023
Transmission dynamics of SARS-CoV-2 variants in the Brazilian state of Pará
Catarina T. Pinho, Amanda F. Vidal, Tatianne Costa Negri Rocha, Renato R. M. Oliveira, Maria Clara da Costa Barros, Laura Closset, Jhully Azevedo-Pinheiro, Cíntia Braga-da-Silva, Caio Santos Silva, Leandro L. Magalhães, Pablo Diego do Carmo Pinto, Giordano Bruno Soares Souza, José Ricardo dos Santos Vieira, Rommel Mario Rodríguez Burbano, Maísa Silva de Sousa, Jorge Estefano Santana de Souza, Gisele Nunes, Moises Batista da Silva, Patrícia Fagundes da Costa, Claudio Guedes Salgado, Rita Catarina Medeiros Sousa, Wim Maurits Sylvain Degrave, Ândrea Ribeiro-dos-Santos, Guilherme Oliveira
Frontiers in Public Health, 2023
Overview of the SARS-CoV-2 genotypes circulating in Latin America during 2021
Jose Arturo Molina-Mora, Jhonnatan Reales-González, Erwin Camacho, Francisco Duarte-Martínez, Pablo Tsukayama, Claudio Soto-Garita, Hebleen Brenes, Estela Cordero-Laurent, Andrea Ribeiro dos Santos, Cláudio Guedes Salgado, Caio Santos Silva, Jorge Santana de Souza, Gisele Nunes, Tatianne Negri, Amanda Vidal, Renato Oliveira, Guilherme Oliveira, José Esteban Muñoz-Medina, Angel Gustavo Salas-Lais, Guadalupe Mireles-Rivera, Ezequiel Sosa, Adrián Turjanski, María Cecilia Monzani, Mauricio G. Carobene, Federico Remes Lenicov, Gustavo Schottlender, Darío A. Fernández Do Porto, Jan Frederik Kreuze, Luisa Sacristán, Marcela Guevara-Suarez, Marco Cristancho, Rebeca Campos-Sánchez, Alfredo Herrera-Estrella
Frontiers in Public Health, 2023
Cross-species transcriptomes reveal species-specific and shared molecular adaptations for plants development on iron-rich rocky outcrops soils
Mariana Costa Dias, Cecílio Caldeira, Markus Gastauer, Silvio Ramos, Guilherme Oliveira
BMC Genomics, 2022
Species redescription and nest architecture of Plebeia flavocincta (Hymenoptera: Apidae: Meliponini)
Ulysses Madureira Maia, Rafael Cabral Borges, José Eustáquio dos Santos-Júnior, Victor Hugo Pedraça Dias, Airton Torres Carvalho, Vera Lucia Imperatriz-Fonseca, Guilherme Corrêa de Oliveira, Tereza Cristina Giannini
Apidologie, 2022
Multilateral benefit-sharing from digital sequence information will support both science and biodiversity conservation
Amber Hartman Scholz, Jens Freitag, Christopher H. C. Lyal, Rodrigo Sara, Martha Lucia Cepeda, Ibon Cancio, Scarlett Sett, Andrew Lee Hufton, Yemisrach Abebaw, Kailash Bansal, Halima Benbouza, Hamadi Iddi Boga, Sylvain Brisse, Michael W. Bruford, Hayley Clissold, Guy Cochrane, Jonathan A. Coddington, Anne-Caroline Deletoille, Felipe García-Cardona, Michelle Hamer, Raquel Hurtado-Ortiz, Douglas W. Miano, David Nicholson, Guilherme Oliveira, Carlos Ospina Bravo, Fabian Rohden, Ole Seberg, Gernot Segelbacher, Yogesh Shouche, Alejandra Sierra, Ilene Karsch-Mizrachi, Jessica da Silva, Desiree M. Hautea, Manuela da Silva, Mutsuaki Suzuki, Kassahun Tesfaye, Christian Keambou Tiambo, Krystal A. Tolley, Rajeev Varshney, María Mercedes Zambrano, Jörg Overmann
Nature Communications, 2022
Genomic analysis of sewage from 101 countries reveals global landscape of antimicrobial resistance
Patrick Munk, Christian Brinch, Frederik Duus Møller, Thomas N. Petersen, Rene S. Hendriksen, Anne Mette Seyfarth, Jette S. Kjeldgaard, Christina Aaby Svendsen, Bram van Bunnik, Fanny Berglund, Artan Bego, Pablo Power, Catherine Rees, Dionisia Lambrinidis, Elizabeth Heather Jakobsen Neilson, Karen Gibb, Kris Coventry, Peter Collignon, Susan Cassar, Franz Allerberger, Anowara Begum, Zenat Zebin Hossain, Carlon Worrell, Olivier Vandenberg, Ilse Pieters, Dougnon Tamègnon Victorien, Angela Daniela Salazar Gutierrez, Freddy Soria, Vesna Rudić Grujić, Nataša Mazalica, Teddie O. Rahube, Carlos Alberto Tagliati, Dalia Rodrigues, Guilherme Oliveira, Larissa Camila Ribeiro de Souza, Ivan Ivanov, Bonkoungou Isidore Juste, Traoré Oumar, Thet Sopheak, Yith Vuthy, Antoinette Ngandjio, Ariane Nzouankeu, Ziem A. Abah Jacques Olivier, Christopher K. Yost, Pratik Kumar, Satinder Kaur Brar, Djim-Adjim Tabo, Aiko D. Adell, Esteban Paredes-Osses, Maria Cristina Martinez, Sara Cuadros-Orellana, Changwen Ke, Huanying Zheng, Li Baisheng, Lok Ting Lau, Teresa Chung, Xiaoyang Jiao, Yongjie Yu, Zhao JiaYong, Johan F. Bernal Morales, Maria Fernanda Valencia, Pilar Donado-Godoy, Kalpy Julien Coulibaly, Jasna Hrenovic, Matijana Jergović, Renáta Karpíšková, Zozo Nyarukweba Deogratias, Bodil Elsborg, Lisbeth Truelstrup Hansen, Pernille Erland Jensen, Mohamed Abouelnaga, Mohamed Fathy Salem, Marliin Koolmeister, Mengistu Legesse, Tadesse Eguale, Annamari Heikinheimo, Soizick Le Guyader, Julien Schaeffer, Jose Eduardo Villacis, Bakary Sanneh, Lile Malania, Andreas Nitsche, Annika Brinkmann, Sara Schubert, Sina Hesse, Thomas U. Berendonk, Courage Kosi Setsoafia Saba, Jibril Mohammed, Patrick Kwame Feglo, Regina Ama Banu, Charalampos Kotzamanidis, Efthymios Lytras, Sergio A. Lickes, Bela Kocsis, Norbert Solymosi, Thorunn R. Thorsteinsdottir, Abdulla Mohamed Hatha, Mamatha Ballal, Sohan Rodney Bangera, Fereshteh Fani, Masoud Alebouyeh, Dearbhaile Morris, Louise O’Connor, Martin Cormican, Jacob Moran-Gilad, Antonio Battisti, Elena Lavinia Diaconu, Gianluca Corno, Andrea Di Cesare, Patricia Alba, Junzo Hisatsune, Liansheng Yu, Makoto Kuroda, Motoyuki Sugai, Shizuo Kayama, Zeinegul Shakenova, Ciira Kiiyukia, Eric Ng’eno, Lul Raka, Kazi Jamil, Saja Adel Fakhraldeen, Tareq Alaati, Aivars Bērziņš, Jeļena Avsejenko, Kristina Kokina, Madara Streikisa, Vadims Bartkevics, Ghassan M. Matar, Ziad Daoud, Asta Pereckienė, Ceslova Butrimaite-Ambrozeviciene, Christian Penny, Alexandra Bastaraud, Tiavina Rasolofoarison, Jean-Marc Collard, Luc Hervé Samison, Mala Rakoto Andrianarivelo, Daniel Lawadi Banda, Arshana Amin, Heraa Rajandas, Sivachandran Parimannan, David Spiteri, Malcolm Vella Haber, Sunita J. Santchurn, Aleksandar Vujacic, Dijana Djurovic, Brahim Bouchrif, Bouchra Karraouan, Delfino Carlos Vubil, Pushkar Pal, Heike Schmitt, Mark van Passel, Gert-Jan Jeunen, Neil Gemmell, Stephen T. Chambers, Fania Perez Mendoza, Jorge Huete-Pιrez, Samuel Vilchez, Akeem Olayiwola Ahmed, Ibrahim Raufu Adisa, Ismail Ayoade Odetokun, Kayode Fashae, Anne-Marie Sørgaard, Astrid Louise Wester, Pia Ryrfors, Rune Holmstad, Mashkoor Mohsin, Rumina Hasan, Sadia Shakoor, Natalie Weiler Gustafson, Claudia Huber Schill, Maria Luz Zamudio Rojas, Jorge Echevarria Velasquez, Bonifacio B. Magtibay, Kris Catangcatang, Ruby Sibulo, Felipe Campos Yauce, Dariusz Wasyl, Celia Manaia, Jaqueline Rocha, Jose Martins, Pedro Álvaro, Doris Di Yoong Wen, Hanseob Shin, Hor-Gil Hur, Sukhwan Yoon, Golubinka Bosevska, Mihail Kochubovski, Radu Cojocaru, Olga Burduniuc, Pei-Ying Hong, Meghan Rose Perry, Amy Gassama, Vladimir Radosavljevic, Moon Y. F. Tay, Rogelio Zuniga-Montanez, Stefan Wuertz, Dagmar Gavačová, Katarína Pastuchová, Peter Truska, Marija Trkov, Karen Keddy, Kerneels Esterhuyse, Min Joon Song, Marcos Quintela-Baluja, Mariano Gomez Lopez, Marta Cerdà-Cuéllar, R. R. D. P. Perera, N. K. B. K. R. G. W. Bandara, H. I. Premasiri, Sujatha Pathirage, Kareem Charlemagne, Carolin Rutgersson, Leif Norrgren, Stefan Örn, Renate Boss, Tanja Van der Heijden, Yu-Ping Hong, Happiness Houka Kumburu, Robinson Hammerthon Mdegela, Yaovi Mahuton Gildas Hounmanou, Kaknokrat Chonsin, Orasa Suthienkul, Visanu Thamlikitkul, Ana Maria de Roda Husman, Bawimodom Bidjada, Berthe-Marie Njanpop-Lafourcade, Somtinda Christelle Nikiema-Pessinaba, Belkis Levent, Cemil Kurekci, Francis Ejobi, John Bosco Kalule, Jens Thomsen, Ouidiane Obaidi, Laila Mohamed Jassim, Andrew Moore, Anne Leonard, David W. Graham, Joshua T. Bunce, Lihong Zhang, William H. Gaze, Brett Lefor, Drew Capone, Emanuele Sozzi, Joe Brown, John Scott Meschke, Mark D. Sobsey, Michael Davis, Nicola Koren Beck, Pardi Sukapanpatharam, Phuong Truong, Ronald Lilienthal, Sanghoon Kang, Thomas E. Wittum, Natalia Rigamonti, Patricia Baklayan, Chinh Dang Van, Doan Minh Nguyen Tran, Nguyen Do Phuc, Geoffrey Kwenda, D. G. Joakim Larsson, Marion Koopmans, Mark Woolhouse, Frank M. Aarestrup, and
Nature Communications, 2022
Comparison of two acidophilic sulfidogenic consortia for the treatment of acidic mine water
Tayná Diniz Frederico, Ivan Nancucheo, Werica Colaço Barros Santos, Renato Renison Moreira Oliveira, Daniella Cardoso Buzzi, Eder Soares Pires, Patricia Magalhães Pereira Silva, Adriano Reis Lucheta, Joner Oliveira Alves, Guilherme Corrêa de Oliveira, José Augusto Pires Bitencourt
Frontiers in Bioengineering and Biotechnology, 2022
Evidence for morphological and genetic structuring of Plebeia flavocincta (Apidae: Meliponini) populations in Northeast Brazil
Ulysses Madureira Maia, José Eustáquio dos Santos Júnior, Michele Molina, Juliana Stephanie Galaschi-Teixeira, Airton Torres Carvalho, Leonardo de Sousa Miranda, Vera Lucia Imperatriz-Fonseca, Guilherme Oliveira, Tereza Cristina Giannini
Frontiers in Ecology and Evolution, 2022
Molecular Mechanisms Underlying Mimosa acutistipula Success in Amazonian Rehabilitating Minelands
Sidney Vasconcelos do Nascimento, Héctor Herrera, Paulo Henrique de Oliveira Costa, Felipe Costa Trindade, Isa Rebecca Chagas da Costa, Cecílio Frois Caldeira, Markus Gastauer, Silvio Junio Ramos, Guilherme Oliveira, Rafael Borges da Silva Valadares
International Journal of Environmental Research and Public Health, 2022
Draft Genome Sequence of the Novel, Moderately Thermophilic, Iron- And Sulfur-Oxidizing Firmicute Strain Y002, Isolated from an Extremely Acidic Geothermal Environment
José Bitencourt, Larissa Scholte, Renato Oliveira, Daniel Morais, Gisele Nunes, Ivan Nancucheo, Rafael Valadares, David S. Holmes, D. Barrie Johnson, Ronnie Alves, Guilherme Oliveira
Microbiology Resource Announcements, 2022
Erratum: Ten simple rules for organizing a bioinformatics training course in low- and middle-income countries (PLoS Computational Biology (2021) 17:8 (e1009218) DOI: 10.1371/journal.pcbi.1009218)
Benjamin Moore, Patricia Carvajal-López, Paballo Abel Chauke, Marco Cristancho, Victoria Dominguez Del Angel, Selene L. Fernandez-Valverde, Amel Ghouila, Piraveen Gopalasingam, Fatma Zahra Guerfali, Alice Matimba, Sarah L. Morgan, Guilherme Oliveira, Verena Ras, Alejandro Reyes, Javier De Las Rivas, Nicola Mulder
Plos Computational Biology, 2022
PipeCoV: a pipeline for SARS-CoV-2 genome assembly, annotation and variant identification
Renato R. M. Oliveira, Tatianne Costa Negri, Gisele Nunes, Inácio Medeiros, Guilherme Araújo, Fabricio de Oliveira Silva, Jorge Estefano Santana de Souza, Ronnie Alves, Guilherme Oliveira
Peerj, 2022
An Integrative View of the Phyllosphere Mycobiome of Native Rubber Trees in the Brazilian Amazon
Paula Luize Camargos Fonseca, Demetra Skaltsas, Felipe Ferreira da Silva, Rodrigo Bentes Kato, Giovanni Marques de Castro, Glen Jasper Yupanqui García, Gabriel Quintanilha-Peixoto, Thairine Mendes-Pereira, Anderson Oliveira do Carmo, Eric Roberto Guimarães Rocha Aguiar, Daniel Santana de Carvalho, Diogo Henrique Costa-Rezende, Elisandro Ricardo Drechsler-Santos, Fernanda Badotti, Alice Ferreira-Silva, Guilherme Oliveira, Priscila Chaverri, Aline Bruna Martins Vaz, Aristóteles Góes-Neto
Journal of Fungi, 2022
Genomic analysis of a parasite invasion: Colonization of the Americas by the blood fluke Schistosoma mansoni
Roy N. Platt, Winka Le Clec'h, Frédéric D. Chevalier, Marina McDew‐White, Philip T. LoVerde, Rafael Ramiro de Assis, Guilherme Oliveira, Safari Kinung'hi, Amadou Garba Djirmay, Michelle L. Steinauer, Anouk Gouvras, Muriel Rabone, Fiona Allan, Bonnie L. Webster, Joanne P. Webster, Aidan M. Emery, David Rollinson, Timothy J. C. Anderson
Molecular Ecology, 2022
Proteomic Profiling and Rhizosphere-Associated Microbial Communities Reveal Adaptive Mechanisms of Dioclea apurensis Kunth in Eastern Amazon’s Rehabilitating Minelands
Sidney Vasconcelos do Nascimento, Paulo Henrique de Oliveira Costa, Hector Herrera, Cecílio Frois Caldeira, Markus Gastauer, Silvio Junio Ramos, Guilherme Oliveira, Rafael Borges da Silva Valadares
Plants, 2022
New plastomes of eight Ipomoea species and four putative hybrids from Eastern Amazon
Marcele Laux, Renato R. M. Oliveira, Santelmo Vasconcelos, Eder S. Pires, Talvâne G. L. Lima, Mayara Pastore, Gisele L. Nunes, Ronnie Alves, Guilherme Oliveira
Plos One, 2022
Molecular diversity and historical phylogeography of the widespread genus Mastiglanis (Siluriformes: Heptapteridae) based on palaeogeographical events in South America
Suellen M Gales, Jonathan Stuart Ready, Mark H Sabaj, Maxwell J Bernt, Derlan José Ferreira Silva, Claudio Oliveira, Guilherme Oliveira, João Bráullio L Sales
Biological Journal of the Linnean Society, 2022
SPLACE: A tool to automatically SPLit, Align, and ConcatenatE genes for phylogenomic inference of several organisms
Renato R. M. Oliveira, Santelmo Vasconcelos, Guilherme Oliveira
Frontiers in Bioinformatics, 2022
Complete mitochondrial genome of the greater round-eared bat, Tonatia bidens (Chiroptera: Phyllostomidae) from Brazil and phylogenetic relationships within the family
João Carlos Farias, Santelmo Vasconcelos, Guilherme Oliveira, Neide Santos, Cibele Gomes Sotero-Caio
Mitochondrial DNA Part B Resources, 2022
Spectral and Soil Quality Index for Monitoring Environmental Rehabilitation and Soil Carbon Stock in an Amazonian Sandstone Mine
Paula Godinho Ribeiro, Gabriel Caixeta Martins, Markus Gastauer, Ediu Carlos da Silva Junior, Diogo Corrêa Santos, Cecílio Frois Caldeira Júnior, Rosane Barbosa Lopes Cavalcante, Douglas Silva dos Santos, Marco Aurélio Carbone Carneiro, Rafael Borges da Silva Valadares, Wilson da Rocha Nascimento Junior, Guilherme Oliveira, Pedro Walfir Martins e Souza Filho, Silvio Junio Ramos
Sustainability Switzerland, 2022
Identification and in silico characterization of structural and functional impacts of genetic variants in milk protein genes in the Zebu breeds Guzerat and Gyr
Carolina Guimarães Ramos Matosinho, Izinara Cruz Rosse, Pablo Augusto Souza Fonseca, Francislon Silva de Oliveira, Fausto Gonçalves dos Santos, Flávio Marcos Gomes Araújo, Anna Christina de Matos Salim, Beatriz Cordenonsi Lopes, Wagner Antonio Arbex, Marco Antônio Machado, Maria Gabriela Campolina Diniz Peixoto, Rui da Silva Verneque, Marta Fonseca Martins, Marcos Vinicius Gualberto Barbosa da Silva, Guilherme Oliveira, Douglas Eduardo Valente Pires, Maria Raquel Santos Carvalho
Tropical Animal Health and Production, 2021
Author Correction: Setting a baseline for global urban virome surveillance in sewage (Scientific Reports, (2020), 10, 1, (13748), 10.1038/s41598-020-69869-0)
David F. Nieuwenhuijse, Bas B. Oude Munnink, My V. T. Phan, the Global Sewage Surveillance project consortium, Rene S. Hendriksen, Artan Bego, Catherine Rees, Elizabeth Heather Neilson, Kris Coventry, Peter Collignon, Franz Allerberger, Teddie O. Rahube, Guilherme Oliveira, Ivan Ivanov, Thet Sopheak, Yith Vuthy, Christopher K. Yost, Djim-adjim Tabo, Sara Cuadros-Orellana, Changwen Ke, Huanying Zheng, Li Baisheng, Xiaoyang Jiao, Pilar Donado-Godoy, Kalpy Julien Coulibaly, Jasna Hrenovic, Matijana Jergović, Renáta Karpíšková, Bodil Elsborg, Mengistu Legesse, Tadesse Eguale, Annamari Heikinheimo, Jose Eduardo Villacis, Bakary Sanneh, Lile Malania, Andreas Nitsche, Annika Brinkmann, Courage Kosi Setsoafia Saba, Bela Kocsis, Norbert Solymosi, Thorunn R. Thorsteinsdottir, Abdulla Mohamed Hatha, Masoud Alebouyeh, Dearbhaile Morris, Louise O’Connor, Martin Cormican, Jacob Moran-Gilad, Antonio Battisti, Patricia Alba, Zeinegul Shakenova, Ciira Kiiyukia, Eric Ng’eno, Lul Raka, Aivars Bērziņš, Jeļena Avsejenko, Vadims Bartkevics, Christian Penny, Heraa Rajandas, Sivachandran Parimannan, Malcolm Vella Haber, Pushkar Pal, Heike Schmitt, Mark van Passel, Milou G.M. van de Schans, Tina Zuidema, Gert-Jan Jeunen, Neil Gemmell, Kayode Fashae, Astrid Louise Wester, Rune Holmstad, Rumina Hasan, Sadia Shakoor, Maria Luz Zamudio Rojas, Dariusz Wasyl, Golubinka Bosevska, Mihail Kochubovski, Cojocaru Radu, Amy Gassama†, Vladimir Radosavljevic, Moon Y.F. Tay, Rogelio Zuniga-Montanez, Stefan Wuertz, Dagmar Gavačová, Marija Trkov, Karen Keddy, Kerneels Esterhuyse, Marta Cerdà-Cuéllar, Sujatha Pathirage, D.G.Joakim Larsson, Leif Norrgren, Stefan Örn, Tanja Van der Heijden, Happiness Houka Kumburu, Ana Maria de RodaHusman, Berthe-Marie Njanpop-Lafourcade, Pawou Bidjada, Somtinda Christelle Nikiema-Pessinaba, Belkis Levent, John Scott Meschke, Nicola Koren Beck, Chinh Van Dang, Doan Minh Nguyen Tran, Nguyen Do Phuc, Geoffrey Kwenda, Patrick Munk, Shweta Venkatakrishnan, Frank M. Aarestrup, Matthew Cotten, Marion P. G. Koopmans
Scientific Reports, 2021
Preliminary placement and new records of an overlooked amazonian tree, Christiana mennegae (Malvaceae)
Rafael G. Barbosa-Silva, Thales Silva Coutinho, Santelmo Vasconcelos, Delmo Fonseca da Silva, Guilherme Oliveira, Daniela C. Zappi
Peerj, 2021
Non-Specific Interactions of Rhizospheric Microbial Communities Support the Establishment of Mimosa acutistipula var. ferrea in an Amazon Rehabilitating Mineland
Paulo Henrique de Oliveira Costa, Sidney Vasconcelos do Nascimento, Hector Herrera, Markus Gastauer, Silvio Junio Ramos, Cecílio Frois Caldeira, Guilherme Oliveira, Rafael Borges da Silva Valadares
Processes, 2021
Shannon tree diversity is a surrogate for mineland rehabilitation status
Markus Gastauer, Priscila Sanjuan de Medeiros Sarmento, Cecílio Frois Caldeira, Arianne Flexa Castro, Silvio Junio Ramos, Leonardo Carreira Trevelin, Rodolfo Jaffé, Gilliana Almeida Rosa, Marco Aurélio Carbone Carneiro, Rafael Borges da Silva Valadares, Guilherme Oliveira, Pedro Walfir Martins Souza Filho
Ecological Indicators, 2021
Going out for dinner-The consumption of agriculture pests by bats in urban areas
Ludmilla M. S. Aguiar, Igor D. Bueno-Rocha, Guilherme Oliveira, Eder S. Pires, Santelmo Vasconcelos, Gisele L. Nunes, Marina R. Frizzas, Pedro H. B. Togni
Plos One, 2021
Unraveling the plant diversity of the Amazonian canga through DNA barcoding
Santelmo Vasconcelos, Gisele L. Nunes, Mariana C. Dias, Jamily Lorena, Renato R. M. Oliveira, Talvâne G. L. Lima, Eder S. Pires, Rafael B. S. Valadares, Ronnie Alves, Maurício T. C. Watanabe, Daniela C. Zappi, Alice L. Hiura, Mayara Pastore, Liziane V. Vasconcelos, Nara F. O. Mota, Pedro L. Viana, André S. B. Gil, André O. Simões, Vera L. Imperatriz‐Fonseca, Raymond M. Harley, Ana M. Giulietti, Guilherme Oliveira
Ecology and Evolution, 2021
Soil metaproteomics as a tool for environmental monitoring of minelands
Felipe Costa Trindade, Markus Gastauer, Silvio Junio Ramos, Cecílio Frois Caldeira, Josiney Farias de Araújo, Guilherme Oliveira, Rafael Borges da Silva Valadares
Forests, 2021
Plastome-based phylogenomics elucidate relationships in rare Isoëtes species groups from the Neotropics
Jovani B.S. Pereira, Ana Maria Giulietti, Jefferson Prado, Santelmo Vasconcelos, Maurício T.C. Watanabe, Diego S.B. Pinangé, Renato R.M. Oliveira, Eder S. Pires, Cecílio F. Caldeira, Guilherme Oliveira
Molecular Phylogenetics and Evolution, 2021
Ten simple rules for organizing a bioinformatics training course in low- and middle-income countries
Benjamin Moore, Patricia Carvajal-López, Paballo Abel Chauke, Marco Cristancho, Victoria Dominguez Del Angel, Selene L. Fernandez-Valverde, Amel Ghouila, Piraveen Gopalasingam, Fatma Zahra Guerfali, Alice Matimba, Sarah L. Morgan, Guilherme Oliveira, Verena Ras, Alejandro Reyes, Javier De Las Rivas, Nicola Mulder
Plos Computational Biology, 2021
Distinct reproductive strategy of two endemic amazonian quillworts
Cecilio F. Caldeira, Arthur V. S. Lopes, Keyvilla C. Aguiar, Aline L. Ferreira, João V. S. Araujo, Vinnícius M. S. Gomes, Daniel B. Zandonadi, Cinthia B. Abranches, Silvio J. Ramos, Markus Gastauer, Naiara V. Campos, Lísia M. S. Gestinari, Luis A. Prado, Fernando M. G. Santos, Rodrigo L. Martins, Francisco A. Esteves, Guilherme Oliveira, Mirella P. Santos
Diversity, 2021
Conservation implications of genetic structure in the narrowest endemic quillwort from the Eastern Amazon
Jeronymo Dalapicolla, Ronnie Alves, Rodolfo Jaffé, Santelmo Vasconcelos, Eder Soares Pires, Gisele Lopes Nunes, Jovani Bernardino de Souza Pereira, José Tasso F. Guimarães, Mariana C. Dias, Taís Nogueira Fernandes, Daniela Scherer, Fernando Marino Gomes dos Santos, Alexandre Castilho, Mirella Pupo Santos, Emiliano Nicolas Calderón, Rodrigo Lemes Martins, Rodrigo Nunes da Fonseca, Francisco de Assis Esteves, Cecílio Frois Caldeira, Guilherme Oliveira
Ecology and Evolution, 2021
Challenges and Considerations for Delivering Bioinformatics Training in LMICs: Perspectives From Pan-African and Latin American Bioinformatics Networks
Verena Ras, Patricia Carvajal-López, Piraveen Gopalasingam, Alice Matimba, Paballo Abel Chauke, Nicola Mulder, Fatma Guerfali, Victoria Dominguez Del Angel, Alejandro Reyes, Guilherme Oliveira, Javier De Las Rivas, Marco Cristancho
Frontiers in Education, 2021
Unexpected diversity in the diet of Doryteuthis sanpaulensis (Brakoniecki, 1984) (Mollusca: Cephalopoda) from the southern Brazilian sardine fishery identified by metabarcoding
Talita Fernanda Augusto Ribas, João Bráullio de Luna Sales, Hugo de Boer, Jarl Andreas Anmarkrud, Renato Oliveira, et al.
Fisheries Research, 2021
Experiences and lessons learned from two virtual, hands-on microbiome bioinformatics workshops
Matthew R. Dillon, Evan Bolyen, Anja Adamov, Aeriel Belk, Emily Borsom, Zachary Burcham, Justine W. Debelius, Heather Deel, Alex Emmons, Mehrbod Estaki, Chloe Herman, Christopher R. Keefe, Jamie T. Morton, Renato R. M. Oliveira, Andrew Sanchez, Anthony Simard, Yoshiki Vázquez-Baeza, Michal Ziemski, Hazuki E. Miwa, Terry A. Kerere, Carline Coote, Richard Bonneau, Rob Knight, Guilherme Oliveira, Piraveen Gopalasingam, Benjamin D. Kaehler, Emily K. Cope, Jessica L. Metcalf, Michael S. Robeson II, Nicholas A. Bokulich, J. Gregory Caporaso
Plos Computational Biology, 2021
Chloroplast genomes of key species shed light on the evolution of the ancient genus Isoetes
Jovani B. S. Pereira, Ana Maria Giulietti, Eder S. Pires, Marcele Laux, Maurício T. C. Watanabe, Renato R. M. Oliveira, Santelmo Vasconcelos, Guilherme Oliveira
Journal of Systematics and Evolution, 2021
The potential for histone deacetylase (HDAC) inhibitors as cestocidal drugs
Hugo Rolando Vaca, Ana María Celentano, María Agustina Toscanini, Tino Heimburg, Ehab Ghazy, Patrik Zeyen, Alexander-Thomas Hauser, Guilherme Oliveira, María Celina Elissondo, Manfred Jung, Wolfgang Sippl, Federico Camicia, Mara Cecilia Rosenzvit
Plos Neglected Tropical Diseases, 2021
PIMBA: A PIpeline for MetaBarcoding Analysis
Renato R. M. Oliveira, Raíssa Silva, Gisele L. Nunes, Guilherme Oliveira
Lecture Notes in Computer Science Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics, 2021
Complete mitochondrial genome of a cave dwelling Desmopachria (Insecta: Coleoptera: Dytiscidae) from the Eastern Amazon
Santelmo Vasconcelos, Renato R. M. Oliveira, Eder S. Pires, Thadeu Pietrobon, Xavier Prous, Angélico Asenjo, Guilherme Oliveira
Mitochondrial DNA Part B Resources, 2021
DNA-Based Arthropod Diversity Assessment in Amazonian Iron Mine Lands Show Ecological Succession Towards Undisturbed Reference Sites
Christina Lynggaard, Douglas W. Yu, Guilherme Oliveira, Cecilio F. Caldeira, Silvio J. Ramos, Martin R. Ellegaard, M. Thomas P. Gilbert, Markus Gastauer, Kristine Bohmann
Frontiers in Ecology and Evolution, 2020
Plant growth and nutrient use efficiency of two native Fabaceae species for mineland revegetation in the eastern Amazon
Silvio J. Ramos, Markus Gastauer, Simone K. Mitre, Cecílio F. Caldeira, Joyce R. Silva, Antonio E. Furtini Neto, Guilherme Oliveira, Pedro W. M. Souza Filho, José O. Siqueira
Journal of Forestry Research, 2020
Setting a baseline for global urban virome surveillance in sewage
David F. Nieuwenhuijse, Bas B. Oude Munnink, My V. T. Phan, the Global Sewage Surveillance project consortium, Rene S. Hendriksen, Artan Bego, Catherine Rees, Elizabeth Heather Neilson, Kris Coventry, Peter Collignon, Franz Allerberger, Teddie O. Rahube, Guilherme Oliveira, Ivan Ivanov, Thet Sopheak, Yith Vuthy, Christopher K. Yost, Djim-adjim Tabo, Sara Cuadros-Orellana, Changwen Ke, Huanying Zheng, Li Baisheng, Xiaoyang Jiao, Pilar Donado-Godoy, Kalpy Julien Coulibaly, Jasna Hrenovic, Matijana Jergović, Renáta Karpíšková, Bodil Elsborg, Mengistu Legesse, Tadesse Eguale, Annamari Heikinheimo, Jose Eduardo Villacis, Bakary Sanneh, Lile Malania, Andreas Nitsche, Annika Brinkmann, Courage Kosi Setsoafia Saba, Bela Kocsis, Norbert Solymosi, Thorunn R. Thorsteinsdottir, Abdulla Mohamed Hatha, Masoud Alebouyeh, Dearbhaile Morris, Louise O’Connor, Martin Cormican, Jacob Moran-Gilad, Antonio Battisti, Patricia Alba, Zeinegul Shakenova, Ciira Kiiyukia, Eric Ng’eno, Lul Raka, Aivars Bērziņš, Jeļena Avsejenko, Vadims Bartkevics, Christian Penny, Heraa Rajandas, Sivachandran Parimannan, Malcolm Vella Haber, Pushkar Pal, Heike Schmitt, Mark van Passel, Milou G.M. van de Schans, Tina Zuidema, Gert-Jan Jeunen, Neil Gemmell, Kayode Fashae, Astrid Louise Wester, Rune Holmstad, Rumina Hasan, Sadia Shakoor, Maria Luz Zamudio Rojas, Dariusz Wasyl, Golubinka Bosevska, Mihail Kochubovski, Cojocaru Radu, Amy Gassama†, Vladimir Radosavljevic, Moon Y.F. Tay, Rogelio Zuniga-Montanez, Stefan Wuertz, Dagmar Gavačová, Marija Trkov, Karen Keddy, Kerneels Esterhuyse, Marta Cerdà-Cuéllar, Sujatha Pathirage, D.G.Joakim Larsson, Leif Norrgren, Stefan Örn, Tanja Van der Heijden, Happiness Houka Kumburu, Ana Maria de RodaHusman, Berthe-Marie Njanpop-Lafourcade, Pawou Bidjada, Somtinda Christelle Nikiema-Pessinaba, Belkis Levent, John Scott Meschke, Nicola Koren Beck, Chinh Van Dang, Doan Minh Nguyen Tran, Nguyen Do Phuc, Geoffrey Kwenda, Patrick Munk, Shweta Venkatakrishnan, Frank M. Aarestrup, Matthew Cotten, Marion P. G. Koopmans
Scientific Reports, 2020
The genetic diversity and population structure of two endemic Amazonian quillwort (Isoetes L.) species
Mirella Pupo Santos, João V.S. Rabelo Araujo, Arthur V. Sant’anna Lopes, Julio Cesar Fiorio Vettorazzi, Marcela Santana Bastos Boechat, Fernanda AbreuSantana Arêdes, Naiara Viana Campos, Emiliano Nicolas Calderon, Fernando M. Gomes Santos, Tais Nogueira Fernandes, Rodrigo Nunes da Fonseca, Messias Gonzaga Pereira, Guilherme Oliveira, Daniel Basilio Zandonadi, RodrigoLemes Martins, Francisco de Assis Esteves
Peerj, 2020
Accelerating microbial iron cycling promotes re-cementation of surface crusts in iron ore regions
Emma J. Gagen, Alan Levett, Anat Paz, Heike Bostelmann, Rafael Borges da Silva Valadares, José Augusto Pires Bitencourt, Markus Gastauer, Gisele Lopes Nunes, Guilherme Oliveira, Paulo M. Vasconcelos, Gene W. Tyson, Gordon Southam
Microbial Biotechnology, 2020
Climate-induced distribution dynamics of Plebeia flavocincta, a stingless bee from Brazilian tropical dry forests
Ulysses Madureira Maia, Leonardo de Sousa Miranda, Airton Torres Carvalho, Vera Lucia Imperatriz‐Fonseca, Guilherme Corrêa Oliveira, Tereza Cristina Giannini
Ecology and Evolution, 2020
Metaproteomes reveal increased capacity for stress tolerance of soil microbes in ferruginous tropical rocky outcrops
Felipe Costa Trindade, Silvio Junio Ramos, Markus Gastauer, Aline Madeira Marques Saraiva, Cecílio Frois Caldeira, Guilherme Oliveira, Rafael Borges da Silva Valadares
Pedobiologia, 2020
Complete mitochondrial genome of Glomeridesmus spelaeus (Diplopoda, Glomeridesmida), a troglobitic species from iron-ore caves in Eastern Amazon
Gisele Lopes Nunes, Renato Renison Moreira Oliveira, Eder Soares Pires, Thadeu Pietrobon, Xavier Prous, Guilherme Oliveira, Santelmo Vasconcelos
Mitochondrial DNA Part B Resources, 2020
The phylogenetic placement of a new species of Belemia in Nyctaginaceae, and the first plastome description for the genus
Daniela C. Zappi, Santelmo Vasconcelos, Maurício T. C. Watanabe, Guilherme Oliveira, Renato R. M. Oliveira, Eder S. Pires, Raymond M. Harley, Ana Maria Giulietti
Systematics and Biodiversity, 2020
Genome size and chromosome number conservation contrasting with karyotype diversity in Hohenbergia (Bromelioideae, Bromeliaceae)
Rodrigo Cesar Gonçalves-Oliveira, Amanda Fagundes Ximenes, Ana Rafaela Oliveira, Santelmo Vasconcelos, Nelson Carvalho-Filho, Guilherme Oliveira, José Marcello Salabert de Campos, Ana Christina Brasileiro-Vidal, Lyderson Facio Viccini, Ana Maria Benko-Iseppon
Botanical Journal of the Linnean Society, 2020
Integrating environmental variables by multivariate ordination enables the reliable estimation of mineland rehabilitation status
Markus Gastauer, Cecílio Frois Caldeira, Sílvio Junio Ramos, Leonardo Carreira Trevelin, Rodolfo Jaffé, Guilherme Oliveira, Mabel Patricia Ortiz Vera, Eder Pires, Flávia Louzeiro de Aguiar Santiago, Marco Aurélio Carbone Carneiro, Felipe Tadashi Asoa Coelho, Rosilene Silva, Pedro Walfir M. Souza-Filho, José-Oswaldo Siqueira
Journal of Environmental Management, 2020
Global monitoring of antimicrobial resistance based on metagenomics analyses of urban sewage
Rene S. Hendriksen, Patrick Munk, Patrick Njage, Bram van Bunnik, Luke McNally, Oksana Lukjancenko, Timo Röder, David Nieuwenhuijse, Susanne Karlsmose Pedersen, Jette Kjeldgaard, Rolf S. Kaas, Philip Thomas Lanken Conradsen Clausen, Josef Korbinian Vogt, Pimlapas Leekitcharoenphon, Milou G. M. van de Schans, Tina Zuidema, Ana Maria de Roda Husman, Simon Rasmussen, Bent Petersen, The Global Sewage Surveillance project consortium, Artan Bego, Catherine Rees, Susan Cassar, Kris Coventry, Peter Collignon, Franz Allerberger, Teddie O. Rahube, Guilherme Oliveira, Ivan Ivanov, Yith Vuthy, Thet Sopheak, Christopher K. Yost, Changwen Ke, Huanying Zheng, Li Baisheng, Xiaoyang Jiao, Pilar Donado-Godoy, Kalpy Julien Coulibaly, Matijana Jergović, Jasna Hrenovic, Renáta Karpíšková, Jose Eduardo Villacis, Mengistu Legesse, Tadesse Eguale, Annamari Heikinheimo, Lile Malania, Andreas Nitsche, Annika Brinkmann, Courage Kosi Setsoafia Saba, Bela Kocsis, Norbert Solymosi, Thorunn R. Thorsteinsdottir, Abdulla Mohamed Hatha, Masoud Alebouyeh, Dearbhaile Morris, Martin Cormican, Louise O’Connor, Jacob Moran-Gilad, Patricia Alba, Antonio Battisti, Zeinegul Shakenova, Ciira Kiiyukia, Eric Ng’eno, Lul Raka, Jeļena Avsejenko, Aivars Bērziņš, Vadims Bartkevics, Christian Penny, Heraa Rajandas, Sivachandran Parimannan, Malcolm Vella Haber, Pushkar Pal, Gert-Jan Jeunen, Neil Gemmell, Kayode Fashae, Rune Holmstad, Rumina Hasan, Sadia Shakoor, Maria Luz Zamudio Rojas, Dariusz Wasyl, Golubinka Bosevska, Mihail Kochubovski, Cojocaru Radu, Amy Gassama, Vladimir Radosavljevic, Stefan Wuertz, Rogelio Zuniga-Montanez, Moon Y. F. Tay, Dagmar Gavačová, Katarina Pastuchova, Peter Truska, Marija Trkov, Kerneels Esterhuyse, Karen Keddy, Marta Cerdà-Cuéllar, Sujatha Pathirage, Leif Norrgren, Stefan Örn, D. G. Joakim Larsson, Tanja Van der Heijden, Happiness Houka Kumburu, Bakary Sanneh, Pawou Bidjada, Berthe-Marie Njanpop-Lafourcade, Somtinda Christelle Nikiema-Pessinaba, Belkis Levent, John Scott Meschke, Nicola Koren Beck, Chinh Dang Van, Nguyen Do Phuc, Doan Minh Nguyen Tran, Geoffrey Kwenda, Djim-adjim Tabo, Astrid Louise Wester, Sara Cuadros-Orellana, Clara Amid, Guy Cochrane, Thomas Sicheritz-Ponten, Heike Schmitt, Jorge Raul Matheu Alvarez, Awa Aidara-Kane, Sünje J. Pamp, Ole Lund, Tine Hald, Mark Woolhouse, Marion P. Koopmans, Håkan Vigre, Thomas Nordahl Petersen, Frank M. Aarestrup
Nature Communications, 2019
Habitat Loss Does Not Always Entail Negative Genetic Consequences
Carolina S. Carvalho, Éder C. M. Lanes, Amanda R. Silva, Cecilio F. Caldeira, Nelson Carvalho-Filho, Markus Gastauer, Vera L. Imperatriz-Fonseca, Wilson Nascimento Júnior, Guilherme Oliveira, José O. Siqueira, Pedro L. Viana, Rodolfo Jaffé
Frontiers in Genetics, 2019
Vertebrate diversity revealed by metabarcoding of bulk arthropod samples from tropical forests
Christina Lynggaard, Martin Nielsen, Luisa Santos‐Bay, Markus Gastauer, Guilherme Oliveira, Kristine Bohmann
Environmental DNA, 2019
Machine learning meets genome assembly
Kleber Padovani de Souza, João Carlos Setubal, André Carlos Ponce de Leon F. de Carvalho, Guilherme Oliveira, Annie Chateau, Ronnie Alves
Briefings in Bioinformatics, 2019
Profiling Transcriptional Regulation and Functional Roles of Schistosoma mansoni c-Jun N-Terminal Kinase
Sandra Grossi Gava, Naiara Clemente Tavares, Franco Harald Falcone, Guilherme Oliveira, Marina Moraes Mourão
Frontiers in Genetics, 2019
A common vaginal microbiota composition among breeds of Bos taurus indicus (Gyr and Nellore)
Silvia Giannattasio-Ferraz, Mateus Laguardia-Nascimento, Marcela Ribeiro Gasparini, Laura Rabelo Leite, Flávio Marcos Gomes Araujo, Anna Christina de Matos Salim, André Penido de Oliveira, Jacques Robert Nicoli, Guilherme Corrêa de Oliveira, Flavio Guimarães da Fonseca, Edel Figueiredo Barbosa-Stancioli
Brazilian Journal of Microbiology, 2019
Filamentous fungi diversity in the natural fermentation of Amazonian cocoa beans and the microbial enzyme activities
Jean Aquino de Araújo, Nelson Rosa Ferreira, Silvia Helena Marques da Silva, Guilherme Oliveira, Ruan Campos Monteiro, Yamila Fernandes Mota Alves, Alessandra Santos Lopes
Annals of Microbiology, 2019
Genomic signatures and co-occurrence patterns of the ultra-small Saccharimonadia (phylum CPR/Patescibacteria) suggest a symbiotic lifestyle
Leandro N. Lemos, Julliane D. Medeiros, Francisco Dini‐Andreote, Gabriel R. Fernandes, Alessandro M. Varani, Guilherme Oliveira, Victor S. Pylro
Molecular Ecology, 2019
Biodiversity surrogates in Amazonian iron cave ecosystems
Leonardo C. Trevelin, Markus Gastauer, Xavier Prous, Gilberto Nicácio, Robson Zampaulo, Iuri Brandi, Guilherme Oliveira, José O. Siqueira, Rodolfo Jaffé
Ecological Indicators, 2019
Landscape genomics to the rescue of a tropical bee threatened by habitat loss and climate change
Rodolfo Jaffé, Jamille C. Veiga, Nathaniel S. Pope, Éder C. M. Lanes, Carolina S. Carvalho, Ronnie Alves, Sónia C. S. Andrade, Maria C. Arias, Vanessa Bonatti, Airton T. Carvalho, Marina S. de Castro, Felipe A. L. Contrera, Tiago M. Francoy, Breno M. Freitas, Tereza C. Giannini, Michael Hrncir, Celso F. Martins, Guilherme Oliveira, Antonio M. Saraiva, Bruno A. Souza, Vera L. Imperatriz‐Fonseca
Evolutionary Applications, 2019
Coupling physiological analysis with proteomic profile to understand the photosynthetic responses of young Euterpe oleracea palms to drought
Hellen Oliveira de Oliveira, Gledson Luiz Salgado de Castro, Lorena Oliveira Correa, Walter Vellasco Duarte Silvestre, Sidney Vasconcelos do Nascimento, Rafael Borges da Silva Valadares, Guilherme Corrêa de Oliveira, Rodolfo Inacio Nunes Santos, Reginaldo Alves Festucci-Buselli, Hugo Alves Pinheiro
Photosynthesis Research, 2019
Transcriptomic profile of two developmental stages of the cestode parasite Mesocestoides corti
T. Basika, G.P. Paludo, F.M. Araujo, A.C. Salim, F. Pais, L. Maldonado, N. Macchiaroli, J. Camargo de Lima, M. Rosenzvit, G.C. Oliveira, L. Kamenetzky, H.B. Ferreira
Molecular and Biochemical Parasitology, 2019
Biogeochemical processes in canga ecosystems: Armoring of iron ore against erosion and importance in iron duricrust restoration in Brazil
Emma J. Gagen, Alan Levett, Anat Paz, Markus Gastauer, Cecílio Frois Caldeira, Rafael Borges da Silva Valadares, José Augusto Pires Bitencourt, Ronnie Alves, Guilherme Oliveira, Jose Oswaldo Siqueira, Paulo M. Vasconcelos, Gordon Southam
Ore Geology Reviews, 2019
Bioreductive dissolution as a pretreatment for recalcitrant rare-earth phosphate minerals associated with lateritic ores
Ivan Nancucheo, Guilherme Oliveira, Manoel Lopes, David Barrie Johnson
Minerals, 2019
Host resistance, genomics and population dynamics in a salmonella enteritidis and phage system
Angela Victoria Holguín, Pablo Cárdenas, Catalina Prada-Peñaranda, Laura Rabelo Leite, Camila Buitrago, Viviana Clavijo, Guilherme Oliveira, Pimlapas Leekitcharoenphon, Frank Møller Aarestrup, Martha J. Vives
Viruses, 2019
Complete mitochondrial genomes of three troglophile cave spiders (Mesabolivar, pholcidae)
Renato Renison Moreira Oliveira, Santelmo Vasconcelos, Eder Soares Pires, Thadeu Pietrobon, Xavier Prous, Guilherme Oliveira
Mitochondrial DNA Part B Resources, 2019
Complete mitochondrial genome of a troglophile Cydnidae (Hemiptera)
Mariana Costa Dias, Renato Renison Moreira Oliveira, Santelmo Vasconcelos, Eder Soares Pires, Xavier Prous, Thadeu Pietrobon, Guilherme Oliveira
Mitochondrial DNA Part B Resources, 2019
Analysis of predicted host–parasite interactomes reveals commonalities and specificities related to parasitic lifestyle and tissues tropism
Yesid Cuesta-Astroz, Alberto Santos, Guilherme Oliveira, Lars J. Jensen
Frontiers in Immunology, 2019
Revisiting the phylogenetic history of helminths through genomics, the case of the new echinococcus oligarthrus genome
Lucas L. Maldonado, Juan Pablo Arrabal, Mara Cecilia Rosenzvit, Guilherme Corrêa De Oliveira, Laura Kamenetzky
Frontiers in Genetics, 2019
Diversity of yeasts during fermentation of cocoa from two sites in the Brazilian amazon
Silvana de F. Oliveira de ALMEIDA, Letícia R Carvalho SILVA, Gilson Celso A. Chagas JUNIOR, Guilherme OLIVEIRA, Silvia Helena Marques da SILVA, Santelmo VASCONCELOS, Alessandra Santos LOPES
Acta Amazonica, 2019
Data descriptor: A metagenomic survey of soil microbial communities along a rehabilitation chronosequence after iron ore mining
Markus Gastauer, Mabel Patricia Ortiz Vera, Kleber Padovani de Souza, Eder Soares Pires, Ronnie Alves, Cecílio Frois Caldeira, Silvio Junio Ramos, Guilherme Oliveira
Scientific Data, 2019
Covellite (CuS) production from a real acid mine drainage treated with biogenic H2S
Patricia Magalhães Pereira Silva, Adriano Reis Lucheta, José Augusto Pires Bitencourt, Andre Luiz Vilaça do Carmo, Ivan Patricio Ñancucheo Cuevas, José Oswaldo Siqueira, Guilherme Corrêa de Oliveira, Joner Oliveira Alves
Metals, 2019
Smp38 MAP kinase regulation in Schistosoma mansoni: Roles in survival, oviposition, and protection against oxidative stress
Lívia das Graças Amaral Avelar, Sandra Grossi Gava, Renata Heisler Neves, Mercedes Carolina Soares Silva, Neusa Araújo, Naiara Clemente Tavares, Assmaa El Khal, Ana Carolina Alves Mattos, José Roberto Machado-Silva, Guilherme Oliveira, Marina de Moraes Mourão
Frontiers in Immunology, 2019
Deep evolutionary origin of limb and fin regeneration
Sylvain Darnet, Aline C. Dragalzew, Danielson B. Amaral, Josane F. Sousa, Andrew W. Thompson, Amanda N. Cass, Jamily Lorena, Eder S. Pires, Carinne M. Costa, Marcos P. Sousa, Nadia B. Fröbisch, Guilherme Oliveira, Patricia N. Schneider, Marcus C. Davis, Ingo Braasch, Igor Schneider
Proceedings of the National Academy of Sciences of the United States of America, 2019
A multiscale study of fungal endophyte communities of the foliar endosphere of native rubber trees in Eastern Amazon
Aline B. M. Vaz, Paula L. C. Fonseca, Fernanda Badotti, Demetra Skaltsas, Luiz M. R. Tomé, Allefi C. Silva, Mayara C. Cunha, Marco A. Soares, Vera L. Santos, Guilherme Oliveira, Priscilla Chaverri, Aristóteles Góes-Neto
Scientific Reports, 2018
Metagenomics-based signature clustering and interactive visualization analysis
Vitor Cirilo Araujo Santos, Leandro Correa, Bianchi Meiguins, Guilherme Oliveira, Ronnie Alves
Proceedings of the International Joint Conference on Neural Networks, 2018
New insights on the phylogenetic relationships among the traditional Philodendron subgenera and the other groups of the Homalomena clade (Araceae)
Santelmo Vasconcelos, Maria de Lourdes Soares, Cássia M. Sakuragui, Thomas B. Croat, Guilherme Oliveira, Ana M. Benko-Iseppon
Molecular Phylogenetics and Evolution, 2018
Whole genome analysis of codon usage in Echinococcus
Lucas L. Maldonado, Georgina Stegmayer, Diego H. Milone, Guilherme Oliveira, Mara Rosenzvit, Laura Kamenetzky
Molecular and Biochemical Parasitology, 2018
Adaptation and tolerance mechanisms developed by mycorrhizal Bipinnula fimbriata plantlets (Orchidaceae) in a heavy metal-polluted ecosystem
Héctor Herrera, Rafael Valadares, Guilherme Oliveira, Alejandra Fuentes, Leonardo Almonacid, Sidney Vasconcelos do Nascimento, Yoav Bashan, Cesar Arriagada
Mycorrhiza, 2018
PIPEBAR and OverlapPER: Tools for a fast and accurate DNA barcoding analysis and paired-end assembly
Renato Renison Moreira Oliveira, Gisele Lopes Nunes, Talvâne Glauber Lopes de Lima, Guilherme Oliveira, Ronnie Alves
BMC Bioinformatics, 2018
Biomarker panels for characterizing microbial community biofilm formation as composite molecular process
Magnus Bosse, Alexander Heuwieser, Andreas Heinzel, Arno Lukas, Guilherme Oliveira, Bernd Mayer
Plos One, 2018
A novel polymer-based genosensor for the detection and quantification of Streptococcus pneumoniae in genomic DNA sample
Fábio P. Ferreira, Ana C. Honorato‐Castro, Jussara Vieira da Silva, Sara‐Cuadros Orellana, Guilherme C. Oliveira, João M. Madurro, Ana G. Brito‐Madurro
Polymer Engineering and Science, 2018
A new genosensor for meningococcal meningitis diagnosis using biological samples
Ana Cristina Honorato de Castro, Leandro Toshio Kochi, Anna Clara Rios Moço, Roney S. Coimbra, Guilherme C. Oliveira, Sara Cuadros-Orellana, João Marcos Madurro, Ana Graci Brito-Madurro
Journal of Solid State Electrochemistry, 2018
Quillworts from the Amazon: A multidisciplinary populational study on Isoetes serracarajensis and Isoetes cangae
Gisele Lopes Nunes, Renato Renison Moreira Oliveira, José Tasso Felix Guimarães, Ana Maria Giulietti, Cecílio Caldeira, Santelmo Vasconcelos, Eder Pires, Mariana Dias, Maurício Watanabe, Jovani Pereira, Rodolfo Jaffé, Cinthia Helena M. M. Bandeira, Nelson Carvalho-Filho, Edilson Freitas da Silva, Tarcísio Magevski Rodrigues, Fernando Marino Gomes dos Santos, Taís Fernandes, Alexandre Castilho, Pedro Walfir M. Souza-Filho, Vera Imperatriz-Fonseca, José Oswaldo Siqueira, Ronnie Alves, Guilherme Oliveira
Plos One, 2018
Blind testing: Dna barcoding sheds light upon the identity of plant fragments as a subsidy for cave conservation
Aline J. Ramalho, Daniela C. Zappi, Gisele L. Nunes, Mauricio T. C. Watanabe, Santelmo Vasconcelos, Mariana C. Dias, Rodolfo Jaffé, Xavier Prous, Tereza C. Giannini, Guilherme Oliveira, Ana M. Giulietti
Frontiers in Plant Science, 2018
Landscape genomic conservation assessment of a narrow-endemic and a widespread morning glory from amazonian savannas
Éder C. Lanes, Nathaniel S. Pope, Ronnie Alves, Nelson M. Carvalho Filho, Tereza C. Giannini, Ana M. Giulietti, Vera L. Imperatriz-Fonseca, Waléria Monteiro, Guilherme Oliveira, Amanda R. Silva, José O. Siqueira, Pedro W. Souza-Filho, Santelmo Vasconcelos, Rodolfo Jaffé
Frontiers in Plant Science, 2018
Differential accumulation of proteins in oil palms affected by fatal yellowing disease
Sidney Vasconcelos do Nascimento, Marcelo Murad Magalhães, Roberto Lisboa Cunha, Paulo Henrique de Oliveira Costa, Ronnie Cley de Oliveira Alves, Guilherme Corrêa de Oliveira, Rafael Borges da Silva Valadares
Plos One, 2018
Pleiotropic alterations in gene expression in Latin American Fasciola hepatica isolates with different susceptibility to drugs
Santiago Radio, Santiago Fontenla, Victoria Solana, Anna C. Matos Salim, Flávio Marcos Gomes Araújo, Pedro Ortiz, Cristian Hoban, Estefan Miranda, Valeria Gayo, Fabiano Sviatopolk-Mirsky Pais, Hugo Solana, Guilherme Oliveira, Pablo Smircich, José F. Tort
Parasites and Vectors, 2018
Computational and experimental approaches to predict host–parasite protein–protein interactions
Yesid Cuesta-Astroz, Guilherme Oliveira
Methods in Molecular Biology, 2018
Conserving relics from ancient underground worlds: Assessing the influence of cave and landscape features on obligate iron cave dwellers from the Eastern Amazon
Rodolfo Jaffé, Xavier Prous, Allan Calux, Markus Gastauer, Gilberto Nicacio, Robson Zampaulo, Pedro W.M. Souza-Filho, Guilherme Oliveira, Iuri V. Brandi, José O. Siqueira
Peerj, 2018
Natural history of the narrow endemics Ipomoea cavalcantei and I. marabaensis from Amazon Canga savannahs
Elena Babiychuk, Sergei Kushnir, Santelmo Vasconcelos, Mariana Costa Dias, Nelson Carvalho-Filho, Gisele Lopes Nunes, Jorge Filipe dos Santos, Lourival Tyski, Delmo Fonseca da Silva, Alexandre Castilho, Vera Lucia Imperatriz Fonseca, Guilherme Oliveira
Scientific Reports, 2017
Single-cell sequencing unveils the lifestyle and CRISPR-based population history of Hydrotalea sp. in acid mine drainage
J. D. Medeiros, L. R. Leite, V. S. Pylro, F. S. Oliveira, V. M. Almeida, G. R. Fernandes, A. C. M. Salim, F. M. G. Araújo, A. C. Volpini, G. Oliveira, S. Cuadros‐Orellana
Molecular Ecology, 2017
Metagenomic analysis and performance of a mesophilic anaerobic reactor treating food waste at various load rates*
Alessandra da Silva Martins, Bernardo Ornelas Ferreira, Nirvana Cecília Ribeiro, Raiane Martins, Laura Rabelo Leite, Guilherme Oliveira, Luis Felipe Colturato, Carlos Augusto Chernicharo, Juliana Calabria de Araujo
Environmental Technology United Kingdom, 2017
Evolutionary relationships among protein lysine deacetylases of parasites causing neglected diseases
Larissa L.S. Scholte, Marina M. Mourão, Fabiano Sviatopolk-Mirsky Pais, Jelena Melesina, Dina Robaa, Angela C. Volpini, Wolfgang Sippl, Raymond J. Pierce, Guilherme Oliveira, Laila A. Nahum
Infection Genetics and Evolution, 2017
Corrigendum: Whole genome analysis of a schistosomiasis-transmitting freshwater snail
Coen M. Adema, LaDeana W. Hillier, Catherine S. Jones, Eric S. Loker, Matty Knight, Patrick Minx, Guilherme Oliveira, Nithya Raghavan, Andrew Shedlock, Laurence Rodrigues do Amaral, Halime D. Arican-Goktas, Juliana G. Assis, Elio Hideo Baba, Olga L. Baron, Christopher J. Bayne, Utibe Bickham-Wright, Kyle K. Biggar, Michael Blouin, Bryony C. Bonning, Chris Botka, Joanna M. Bridger, Katherine M. Buckley, Sarah K. Buddenborg, Roberta Lima Caldeira, Julia Carleton, Omar S. Carvalho, Maria G. Castillo, Iain W. Chalmers, Mikkel Christensens, Sandra Clifton, Celine Cosseau, Christine Coustau, Richard M. Cripps, Yesid Cuesta-Astroz, Scott F. Cummins, Leon Di Stefano, Nathalie Dinguirard, David Duval, Scott Emrich, Cédric Feschotte, Rene Feyereisen, Peter FitzGerald, Catrina Fronick, Lucinda Fulton, Richard Galinier, Sandra G. Gava, Michael Geusz, Kathrin K. Geyer, Gloria I. Giraldo-Calderón, Matheus de Souza Gomes, Michelle A. Gordy, Benjamin Gourbal, Christoph Grunau, Patrick C. Hanington, Karl F. Hoffmann, Daniel Hughes, Judith Humphries, Daniel J. Jackson, Liana K. Jannotti-Passos, Wander de Jesus Jeremias, Susan Jobling, Bishoy Kamel, Aurélie Kapusta, Satwant Kaur, Joris M. Koene, Andrea B. Kohn, Dan Lawson, Scott P. Lawton, Di Liang, Yanin Limpanont, Sijun Liu, Anne E. Lockyer, Ty Anna L. Lovato, Fernanda Ludolf, Vince Magrini, Donald P. McManus, Monica Medina, Milind Misra, Guillaume Mitta, Gerald M. Mkoji, Michael J. Montague, Cesar Montelongo, Leonid L. Moroz, Monica C. Munoz-Torres, Umar Niazi, Leslie R. Noble, Francislon S. Oliveira, Fabiano S. Pais, Anthony T. Papenfuss, Rob Peace, Janeth J. Pena, Emmanuel A. Pila, Titouan Quelais, Brian J. Raney, Jonathan P. Rast, David Rollinson, Izinara C. Rosse, Bronwyn Rotgans, Edwin J. Routledge, Kathryn M. Ryan, Larissa L. S. Scholte, Kenneth B. Storey, Martin Swain, Jacob A. Tennessen, Chad Tomlinson, Damian L. Trujillo, Emanuela V. Volpi, Anthony J. Walker, Tianfang Wang, Ittiprasert Wannaporn, Wesley C. Warren, Xiao-Jun Wu, Timothy P. Yoshino, Mohammed Yusuf, Si-Ming Zhang, Min Zhao, Richard K. Wilson
Nature Communications, 2017
Helminth secretomes reflect different lifestyles and parasitized hosts
Yesid Cuesta-Astroz, Francislon Silva de Oliveira, Laila Alves Nahum, Guilherme Oliveira
International Journal for Parasitology, 2017
Illumina sequencing-based analysis of a microbial community enriched under anaerobic methane oxidation condition coupled to denitrification revealed coexistence of aerobic and anaerobic methanotrophs
Luciene Alves Batista Siniscalchi, Laura Rabelo Leite, Guilherme Oliveira, Carlos Augusto Lemos Chernicharo, Juliana Calabria de Araújo
Environmental Science and Pollution Research, 2017
Schistosoma mansoni: Off-target analyses using nonspecific double-stranded RNAs as control for RNAi experiments in schistosomula
Sandra Grossi Gava, Naiara Clemente Tavares, Anna Christina de Matos Salim, Flávio Marcos Gomes de Araújo, Guilherme Oliveira, Marina Moraes Mourão
Experimental Parasitology, 2017
Comparative sequence analysis reveals regulation of genes in developing schistosomula of Schistosoma mansoni exposed to host portal serum
Wander de Jesus Jeremias, Flávio Marcos Gomes Araújo, Fábio Ribeiro Queiroz, Fabiano Sviatopolk Mirsky Pais, Ana Carolina Alves de Mattos, Anna Christina de Matos Salim, Paulo Marcos Zech Coelho, Guilherme Correa Oliveira, John Robert Kusel, Renata Guerra-Sá, Roney Santos Coimbra, Élio Hideo Babá
Plos One, 2017
Whole genome analysis of a schistosomiasis-transmitting freshwater snail
Coen M. Adema, LaDeana W. Hillier, Catherine S. Jones, Eric S. Loker, Matty Knight, Patrick Minx, Guilherme Oliveira, Nithya Raghavan, Andrew Shedlock, Laurence Rodrigues do Amaral, Halime D. Arican-Goktas, Juliana G. Assis, Elio Hideo Baba, Olga L. Baron, Christopher J. Bayne, Utibe Bickham-Wright, Kyle K. Biggar, Michael Blouin, Bryony C. Bonning, Chris Botka, Joanna M. Bridger, Katherine M. Buckley, Sarah K. Buddenborg, Roberta Lima Caldeira, Julia Carleton, Omar S. Carvalho, Maria G. Castillo, Iain W. Chalmers, Mikkel Christensens, Sandra Clifton, Celine Cosseau, Christine Coustau, Richard M. Cripps, Yesid Cuesta-Astroz, Scott F. Cummins, Leon di Stefano, Nathalie Dinguirard, David Duval, Scott Emrich, Cédric Feschotte, Rene Feyereisen, Peter FitzGerald, Catrina Fronick, Lucinda Fulton, Richard Galinier, Sandra G. Gava, Michael Geusz, Kathrin K. Geyer, Gloria I. Giraldo-Calderón, Matheus de Souza Gomes, Michelle A. Gordy, Benjamin Gourbal, Christoph Grunau, Patrick C. Hanington, Karl F. Hoffmann, Daniel Hughes, Judith Humphries, Daniel J. Jackson, Liana K. Jannotti-Passos, Wander de Jesus Jeremias, Susan Jobling, Bishoy Kamel, Aurélie Kapusta, Satwant Kaur, Joris M. Koene, Andrea B. Kohn, Dan Lawson, Scott P Lawton, Di Liang, Yanin Limpanont, Sijun Liu, Anne E. Lockyer, TyAnna L. Lovato, Fernanda Ludolf, Vince Magrini, Donald P. McManus, Monica Medina, Milind Misra, Guillaume Mitta, Gerald M. Mkoji, Michael J. Montague, Cesar Montelongo, Leonid L. Moroz, Monica C. Munoz-Torres, Umar Niazi, Leslie R. Noble, Francislon S. Oliveira, Fabiano S. Pais, Anthony T. Papenfuss, Rob Peace, Janeth J. Pena, Emmanuel A. Pila, Titouan Quelais, Brian J. Raney, Jonathan P. Rast, David Rollinson, Izinara C. Rosse, Bronwyn Rotgans, Edwin J. Routledge, Kathryn M. Ryan, Larissa L. S. Scholte, Kenneth B. Storey, Martin Swain, Jacob A. Tennessen, Chad Tomlinson, Damian L. Trujillo, Emanuela V. Volpi, Anthony J. Walker, Tianfang Wang, Ittiprasert Wannaporn, Wesley C. Warren, Xiao-Jun Wu, Timothy P. Yoshino, Mohammed Yusuf, Si-Ming Zhang, Min Zhao, Richard K. Wilson
Nature Communications, 2017
Effectiveness of ITS and sub-regions as DNA barcode markers for the identification of Basidiomycota (Fungi)
Fernanda Badotti, Francislon Silva de Oliveira, Cleverson Fernando Garcia, Aline Bruna Martins Vaz, Paula Luize Camargos Fonseca, Laila Alves Nahum, Guilherme Oliveira, Aristóteles Góes-Neto
BMC Microbiology, 2017
Using next-generation sequencing (NGS) to uncover diversity of wood-decaying fungi in neotropical atlantic forests
ALINE B.M. VAZ, PAULA L.C. FONSECA, LAURA R. LEITE, FERNANDA BADOTTI, ANNA C.M. SALIM, FLAVIO M.G. ARAUJO, SARA CUADROS-ORELLANA, ÂNGELO A. DUARTE, CARLOS A. ROSA, GUILHERME OLIVEIRA, ARISTÓTELES GÓES-NETO
Phytotaxa, 2017
Whole genome sequencing of Guzerá cattle reveals genetic variants in candidate genes for production, disease resistance, and heat tolerance
Izinara C. Rosse, Juliana G. Assis, Francislon S. Oliveira, Laura R. Leite, Flávio Araujo, Adhemar Zerlotini, Angela Volpini, Anderson J. Dominitini, Beatriz C. Lopes, Wagner A. Arbex, Marco A. Machado, Maria G. C. D. Peixoto, Rui S. Verneque, Marta F. Martins, Roney S. Coimbra, Marcos V. G. B. Silva, Guilherme Oliveira, Maria Raquel S. Carvalho
Mammalian Genome, 2017
Reductive dissolution of a lateritic ore containing rare earth elements (REE) using acidithiobacillus species
Ivan Nancucheo, D. Barrie Johnson, Manoel Lopes, Guilherme Oliveira
Solid State Phenomena, 2017
Recent Developments for Remediating Acidic Mine Waters Using Sulfidogenic Bacteria
Ivan Nancucheo, José A. P. Bitencourt, Prafulla K. Sahoo, Joner Oliveira Alves, José O. Siqueira, Guilherme Oliveira
Biomed Research International, 2017
Bioleaching of electronic waste using bacteria isolated from the marine sponge Hymeniacidon heliophila (Porifera)
Enrique E. Rozas, Maria A. Mendes, Claudio A.O. Nascimento, Denise C.R. Espinosa, Renato Oliveira, Guilherme Oliveira, Marcio R. Custodio
Journal of Hazardous Materials, 2017
The Echinococcus canadensis (G7) genome: A key knowledge of parasitic platyhelminth human diseases
Lucas L. Maldonado, Juliana Assis, Flávio M. Gomes Araújo, Anna C. M. Salim, Natalia Macchiaroli, Marcela Cucher, Federico Camicia, Adolfo Fox, Mara Rosenzvit, Guilherme Oliveira, Laura Kamenetzky
BMC Genomics, 2017
Genome-wide signatures of complex introgression and adaptive evolution in the big cats
Henrique V. Figueiró, Gang Li, Fernanda J. Trindade, Juliana Assis, Fabiano Pais, Gabriel Fernandes, Sarah H. D. Santos, Graham M. Hughes, Aleksey Komissarov, Agostinho Antunes, Cristine S. Trinca, Maíra R. Rodrigues, Tyler Linderoth, Ke Bi, Leandro Silveira, Fernando C. C. Azevedo, Daniel Kantek, Emiliano Ramalho, Ricardo A. Brassaloti, Priscilla M. S. Villela, Adauto L. V. Nunes, Rodrigo H. F. Teixeira, Ronaldo G. Morato, Damian Loska, Patricia Saragüeta, Toni Gabaldón, Emma C. Teeling, Stephen J. O’Brien, Rasmus Nielsen, Luiz L. Coutinho, Guilherme Oliveira, William J. Murphy, Eduardo Eizirik
Science Advances, 2017
Hybrid agent-based model for quantitative in-silico cell-free protein synthesis
Anton Semenchenko, Guilherme Oliveira, A.P.F. Atman
Biosystems, 2016
Reconciling mining with the conservation of cave biodiversity: A quantitative baseline to help establish conservation priorities
Rodolfo Jaffé, Xavier Prous, Robson Zampaulo, Tereza C. Giannini, Vera L. Imperatriz-Fonseca, Clóvis Maurity, Guilherme Oliveira, Iuri V. Brandi, José O. Siqueira
Plos One, 2016
Expression of myogenes in longissimus dorsi muscle during prenatal development in commercial and local Piau pigs
Evelyze Pinheiro dos Reis, Débora Martins Paixão, Otávio José Bernardes Brustolini, Fabyano Fonseca e Silva, Walmir Silva, Flávio Marcos Gomes de Araújo, Anna Christina de Matos Salim, Guilherme Oliveira, Simone Eliza Facioni Guimarães
Genetics and Molecular Biology, 2016
Metagenomic signatures of a tropical mining-impacted stream reveal complex microbial and metabolic networks
Mariana P. Reis, Marcela F. Dias, Patrícia S. Costa, Marcelo P. Ávila, Laura R. Leite, Flávio M.G. de Araújo, Anna C.M. Salim, Mônica Bucciarelli-Rodriguez, Guilherme Oliveira, Edmar Chartone-Souza, Andréa M.A. Nascimento
Chemosphere, 2016
Isolation and characterisation of mineral-oxidising “Acidibacillus” spp. from mine sites and geothermal environments in different global locations
Roseanne Holanda, Sabrina Hedrich, Ivan Ňancucheo, Guilherme Oliveira, Barry M. Grail, D. Barrie Johnson
Research in Microbiology, 2016
LRR-RLK family from two Citrus species: Genome-wide identification and evolutionary aspects
Diogo M. Magalhães, Larissa L. S. Scholte, Nicholas V. Silva, Guilherme C. Oliveira, Cyril Zipfel, Marco A. Takita, Alessandra A. De Souza
BMC Genomics, 2016
BMPOS: a Flexible and User-Friendly Tool Sets for Microbiome Studies
Victor S. Pylro, Daniel K. Morais, Francislon S. de Oliveira, Fausto G. dos Santos, Leandro N. Lemos, Guilherme Oliveira, Luiz F. W. Roesch
Microbial Ecology, 2016
Independent origins of loss-of-function mutations conferring oxamniquine resistance in a Brazilian schistosome population
Frédéric D. Chevalier, Winka Le Clec’h, Nina Eng, Anastasia R. Rugel, Rafael Ramiro de Assis, Guilherme Oliveira, Stephen P. Holloway, Xiaohang Cao, P. John Hart, Philip T. LoVerde, Timothy J.C. Anderson
International Journal for Parasitology, 2016
A next-generation proteome array for Schistosoma mansoni
Rafael Ramiro de Assis, Fernanda Ludolf, Rie Nakajima, Al Jasinskas, Guilherme C. Oliveira, Philip L. Felgner, Soraya T. Gaze, Alex Loukas, Philip T. LoVerde, Jeffrey M. Bethony, Rodrigo Correa-Oliveira, Carlos E. Calzavara-Silva
International Journal for Parasitology, 2016
Metagenomic analysis of a desulphurisation system used to treat biogas from vinasse methanisation
Marcela França Dias, Luis Felipe Colturato, João Paulo de Oliveira, Laura Rabelo Leite, Guilherme Oliveira, Carlos Augusto Chernicharo, Juliana Calabria de Araújo
Bioresource Technology, 2016
Estimation of genetic diversity in viral populations from next generation sequencing data with extremely deep coverage
Jean P. Zukurov, Sieberth do Nascimento-Brito, Angela C. Volpini, Guilherme C. Oliveira, Luiz Mario R. Janini, Fernando Antoneli
Algorithms for Molecular Biology, 2016
Complete mitochondrial genome sequence of Melipona scutellaris, a Brazilian stingless bee
Ulisses de Padua Pereira, Ana Maria Bonetti, Luiz Ricardo Goulart, Anderson Rodrigues dos Santos, Guilherme Correa de Oliveira, Sara Cuadros-Orellana, Carlos Ueira-Vieira
Mitochondrial DNA, 2016
Draft genome sequence of a novel acidophilic iron-oxidizing Firmicutes species, "Acidibacillus ferrooxidans" (SLC66T)
Ivan Ñancucheo, Renato Oliveira, Hivana Dall'Agnol, D. Barrie Johnson, Barry Grail, Roseanne Holanda, Gisele Lopes Nunes, Sara Cuadros-Orellana, Guilherme Oliveira
Genome Announcements, 2016
Draft genome sequences of Staphylococcus aureus strains isolated from subclinical bovine mastitis in Brazil
Danielle Mendes Silva, Mônica Pacheco da Silva, Pedro M. Pereira Vidigal, Rafael Mazioli Barcelos, Raphael Contelli Klein, Ananda Pereira Aguilar, Mary Hellen Fabres-Klein, Guilherme Oliveira, Andréa Oliveira Barros Ribon
Genome Announcements, 2016
Draft genome sequence of Hydrotalea flava strain CCUG 51397T
Laura Rabelo Leite, Julliane Dutra Medeiros, Gabriel Rocha Fernandes, Flávio Araújo, Victor Satler Pylro, Anna Christina Salim, Ângela Volpini, Guilherme Oliveira, Sara Cuadros-Orellana
Genome Announcements, 2016
Erratum: Silva et al., Draft Genome Sequences of Staphylococcus aureus Strains Isolated from Subclinical Bovine Mastitis in Brazil [Genome Announcements, 3, 2, e001594-15, (2015)]doi 10.1128/genomeA.01594-15
Danielle Mendes Silva, Mônica Pacheco da Silva, Pedro M. Pereira Vidigal, Rafael Mazioli Barcelos, Raphael Contelli Klein, Ananda Pereira Aguilar, Mary Hellen Fabres-Klein, Guilherme Oliveira, Andréa Oliveira Barros Ribon
Genome Announcements, 2016
Endophytic Microbiota Associated with the Root Tips and Leaves of Baccharis dracunculifolia
Raiana S. M. Santana, G. W. Fernandes, Marcelo P. Ávila, Mariana P. Reis, Flávio M. G. de Araújo, Anna C. M. Salim, Guilherme Oliveira, Edmar Chartone-Souza, Andréa M. A. Nascimento
Brazilian Archives of Biology and Technology, 2016
Draft genome sequence of "Acidibacillus ferrooxidans" ITV01, a novel acidophilic firmicute isolated from a chalcopyrite mine drainage site in Brazil
Hivana Dall'Agnol, Ivan Ñancucheo, D. Barrie Johnson, Renato Oliveira, Laura Leite, Victor S. Pylro, Roseanne Holanda, Barry Grail, Nelson Carvalho, Gisele Lopes Nunes, George Tzotzos, Gabriel Rocha Fernandes, Julliane Dutra, Sara Cuadros Orellana, Guilherme Oliveira
Genome Announcements, 2016
Vaginal microbiome characterization of Nellore cattle using metagenomic analysis
Mateus Laguardia-Nascimento, Kelly Moreira Grillo Ribeiro Branco, Marcela Ribeiro Gasparini, Silvia Giannattasio-Ferraz, Laura Rabelo Leite, Flávio Marcos Gomes Araujo, Anna Christina de Matos Salim, Jacques Robert Nicoli, Guilherme Corrêa de Oliveira, Edel Figueiredo Barbosa-Stancioli
Plos One, 2015
The Leishmania metaphylome: A comprehensive survey of Leishmania protein phylogenetic relationships
Hugo O. Valdivia, Larissa L. S. Scholte, Guilherme Oliveira, Toni Gabaldón, Daniella C. Bartholomeu
BMC Genomics, 2015
Electropolymerization of hydroxyphenylacetic acid isomers and the development of a bioelectrode for the diagnosis of bacterial meningitis
Luciano Pereira Rodrigues, Deusmaque Carneiro Ferreira, Lucas Franco Ferreira, Sara Cuadros-Orellana, Guilherme Corrêa de Oliveira, Ana G. Brito-Madurro, Ronaldo Junio de Oliveira, Odonírio Abrahão, João M. Madurro
Journal of Applied Electrochemistry, 2015
HIV-1 tropism determines different mutation profiles in proviral DNA
Sieberth Nascimento-Brito, Jean Paulo Zukurov, Juliana T. Maricato, Angela C. Volpini, Anna Christina M. Salim, Flávio M. G. Araújo, Roney S. Coimbra, Guilherme C. Oliveira, Fernando Antoneli, Luiz Mário R. Janini
Plos One, 2015
Synergy of Omeprazole and Praziquantel In Vitro Treatment against Schistosoma mansoni Adult Worms
Giulliana T. Almeida, Regina C. G. Lage, Leticia Anderson, Thiago M. Venancio, Helder I. Nakaya, Patrícia A. Miyasato, Henrique K. Rofatto, Adhemar Zerlotini, Eliana Nakano, Guilherme Oliveira, Sergio Verjovski-Almeida
Plos Neglected Tropical Diseases, 2015
HDAC8: A multifaceted target for therapeutic interventions
Alokta Chakrabarti, Ina Oehme, Olaf Witt, Guilherme Oliveira, Wolfgang Sippl, Christophe Romier, Raymond J. Pierce, Manfred Jung
Trends in Pharmacological Sciences, 2015
Comparative proteomics of cerebrospinal fluid reveals a predictive model for differential diagnosis of pneumococcal, meningococcal, and enteroviral meningitis, and novel putative therapeutic targets
Ana Paula Cordeiro, Rosiane Aparecida Silva Pereira, Alex Chapeaurouge, Clarice Semião Coimbra, Jonas Perales, Guilherme Oliveira, Talitah Michel Sanchez Candiani, Roney Santos Coimbra
BMC Genomics, 2015
Medicinal plants recommended by the world health organization: DNA barcode identification associated with chemical analyses guarantees their quality
Rafael Melo Palhares, Marcela Gonçalves Drummond, Bruno dos Santos Alves Figueiredo Brasil, Gustavo Pereira Cosenza, Maria das Graças Lins Brandão, Guilherme Oliveira
Plos One, 2015
Taxonomic and functional diversity of microbial community from a mining environment
Julliane D Medeiros, Laura R Leite, Sara Cuadros-Orellana, Guilherme Oliveira
BMC Bioinformatics, 2015
How has the genomics era impacted schistosomiasis drug discovery?
Guilherme Oliveira, Raymond J Pierce
Future Medicinal Chemistry, 2015
Drugging the schistosome zinc-dependent HDACs: Current progress and future perspectives
Martin Marek, Guilherme Oliveira, Raymond J Pierce, Manfred Jung, Wolfgang Sippl, Christophe Romier
Future Medicinal Chemistry, 2015
Metagenome of a microbial community inhabiting a metal-rich tropical stream sediment
Patrícia S. Costa, Mariana P. Reis, Marcelo P. Ávila, Laura R. Leite, Flávio M. G. de Araújo, Anna C. M. Salim, Guilherme Oliveira, Francisco Barbosa, Edmar Chartone-Souza, Andréa M. A. Nascimento
Plos One, 2015
Use of Humanised Rat Basophilic Leukaemia Cell Line RS-ATL8 for the Assessment of Allergenicity of Schistosoma mansoni Proteins
Daniel Wan, Fernanda Ludolf, Daniel G. W. Alanine, Owen Stretton, Eman Ali Ali, Nafal Al-Barwary, Xiaowei Wang, Michael J. Doenhoff, Adriano Mari, Colin M. Fitzsimmons, David W. Dunne, Ryosuke Nakamura, Guilherme C. Oliveira, Marcos J. C. Alcocer, Franco H. Falcone
Plos Neglected Tropical Diseases, 2014
The use of an integrated molecular-, chemical- and biological-based approach for promoting the better use and conservation of medicinal species: A case study of Brazilian quinas
Rafael M. Palhares, Marcela G. Drummond, Bruno S.A.F. Brasil, Antoniana U. Krettli, Guilherme C. Oliveira, Maria G.L. Brandão
Journal of Ethnopharmacology, 2014
Assessing the efficiency of multiple sequence alignment programs
Fabiano Sviatopolk-Mirsky Pais, Patrícia de Cássia Ruy, Guilherme Oliveira, Roney Santos Coimbra
Algorithms for Molecular Biology, 2014
Cancer and parasitic infections: Similarities and opportunities for the development of new control tools
Guilherme Oliveira
Revista Da Sociedade Brasileira De Medicina Tropical, 2014
Heterologous expression in Caenorhabditis elegans as an alternative approach to functional studies in Schistosoma mansoni
Sandra G. Gava, Larissa L. S. Scholte, Ã‚ngela Volpini, Riva de Paula Oliveira, Guilherme Oliveira
Frontiers in Genetics, 2014
Epigenetic control of gene function in schistosomes: A source of therapeutic targets?
Alejandro Cabezas-Cruz, Julien Lancelot, Stéphanie Caby, Guilherme Oliveira, Raymond J. Pierce
Frontiers in Genetics, 2014
Evolutionary analysis of the cystatin family in three Schistosoma species
Yesid Cuesta-Astroz, Larissa L. S. Scholte, Fabiano Sviatopolk-Mirsky Pais, Guilherme Oliveira, Laila A. Nahum
Frontiers in Genetics, 2014
Preliminary characterization of mitochondrial genome of Melipona scutellaris, a Brazilian stingless bee
Manuella Souza Silverio, Vinícius de Rezende Rodovalho, Ana Maria Bonetti, Guilherme Corrêa de Oliveira, Sara Cuadros-Orellana, Carlos Ueira-Vieira, Anderson Rodrigues dos Santos
Biomed Research International, 2014
Microarray analysis of tick-infested skin in resistant and susceptible cattle confirms the role of inflammatory pathways in immune activation and larval rejection
Wanessa Araújo Carvalho, Robert Domingues, Marcia Cristina de Azevedo Prata, Marcos Vinícius G.B. da Silva, Guilherme Corrêa de Oliveira, Simone Eliza Facioni Guimarães, Marco Antônio Machado
Veterinary Parasitology, 2014
Serological Screening of the Schistosoma mansoni Adult Worm Proteome
Fernanda Ludolf, Paola R. Patrocínio, Rodrigo Corrêa-Oliveira, Andréa Gazzinelli, Franco H. Falcone, André Teixeira-Ferreira, Jonas Perales, Guilherme C. Oliveira, Rosiane A. Silva-Pereira
Plos Neglected Tropical Diseases, 2014
Draft genome sequence of Salmonella enterica subsp. enterica serovar Gallinarum biovar Pullorum strain FCAV198, a Brazilian chicken pathogen
Genome Announcements, 2014
Regulation of Schistosoma mansoni Development and Reproduction by the Mitogen-Activated Protein Kinase Signaling Pathway
Luiza Freire de Andrade, Marina de Moraes Mourão, Juliana Assis Geraldo, Fernanda Sales Coelho, Larissa Lopes Silva, Renata Heisler Neves, Angela Volpini, José Roberto Machado-Silva, Neusa Araujo, Rafael Nacif-Pimenta, Conor R. Caffrey, Guilherme Oliveira
Plos Neglected Tropical Diseases, 2014
An Immunomics Approach to Schistosome Antigen Discovery: Antibody Signatures of Naturally Resistant and Chronically Infected Individuals from Endemic Areas
Soraya Gaze, Patrick Driguez, Mark S. Pearson, Tiago Mendes, Denise L. Doolan, Angela Trieu, Donald P. McManus, Geoffrey N. Gobert, Maria Victoria Periago, Rodrigo Correa Oliveira, Fernanda C. Cardoso, Guilherme Oliveira, Rie Nakajima, Al Jasinskas, Chris Hung, Li Liang, Jozelyn Pablo, Jeffrey M. Bethony, Philip L. Felgner, Alex Loukas
Plos Pathogens, 2014
Significant variance in genetic diversity among populations of Schistosoma haematobium detected using microsatellite DNA loci from a genome-wide database
Travis C Glenn, Stacey L Lance, Anna M McKee, Bonnie L Webster, Aidan M Emery, Adhemar Zerlotini, Guilherme Oliveira, David Rollinson, Brant C Faircloth
Parasites and Vectors, 2013
Elucidating the temporal and spatial dynamics of Biomphalaria glabrata genetic diversity in three Brazilian villages
Elizabeth A. Thiele, Guilherme Corrêa‐Oliveira, Andrea Gazzinelli, Dennis J. Minchella
Tropical Medicine and International Health, 2013
Structural Basis for the Inhibition of Histone Deacetylase 8 (HDAC8), a Key Epigenetic Player in the Blood Fluke Schistosoma mansoni
Martin Marek, Srinivasaraghavan Kannan, Alexander-Thomas Hauser, Marina Moraes Mourão, Stéphanie Caby, Vincent Cura, Diana A. Stolfa, Karin Schmidtkunz, Julien Lancelot, Luiza Andrade, Jean-Paul Renaud, Guilherme Oliveira, Wolfgang Sippl, Manfred Jung, Jean Cavarelli, Raymond J. Pierce, Christophe Romier
Plos Pathogens, 2013
Complete genome sequence of Streptococcus agalactiae strain SA20-06, A fish pathogen associated to meningoencephalitis outbreaks
Ulisses de Pádua Pereira, Anderson Rodrigues dos Santos, Syed Shah Hassan, Flávia Figueira Aburjaile, Siomar de Castro Soares, Rommel Thiago Jucá Ramos, Adriana Ribeiro Carneiro, Luís Carlos Guimarães, Sintia Silva de Almeida, Carlos Augusto Almeida Diniz, Maria Silvanira Barbosa, Pablo Gomes de Sá, Amjad Ali, Syeda Marriam Bakhtiar, Fernanda Alves Dorella, Adhemar Zerlotini, Flávio Marcos Gomes Araújo, Laura Rabelo Leite, Guilherme Oliveira, Anderson Miyoshi, Artur Silva, Vasco Azevedo, Henrique César Pereira Figueiredo
Standards in Genomic Sciences, 2013
Praziquantel Treatment Decreases Schistosoma mansoni Genetic Diversity in Experimental Infections
Regina Coeli, Elio H. Baba, Neusa Araujo, Paulo M. Z. Coelho, Guilherme Oliveira
Plos Neglected Tropical Diseases, 2013
Mitochondrial cardioencephalomyopathy due to a novel SCO2 mutation in a brazilian patient: Case report and literature review
Juliana Gurgel-Giannetti, Guilherme Oliveira, Geraldo Brasileiro Filho, Poliana Martins, Mariz Vainzof, Michio Hirano
JAMA Neurology, 2013
Schistosoma mansoni Sirtuins: Characterization and Potential as Chemotherapeutic Targets
Julien Lancelot, Stéphanie Caby, Florence Dubois-Abdesselem, Mathieu Vanderstraete, Jacques Trolet, Guilherme Oliveira, Franz Bracher, Manfred Jung, Raymond J. Pierce
Plos Neglected Tropical Diseases, 2013
SchistoDB: An updated genome resource for the three key schistosomes of humans
Adhemar Zerlotini, Eric R. G. R. Aguiar, Fudong Yu, Huayong Xu, Yixue Li, Neil D. Young, Robin B. Gasser, Anna V. Protasio, Matthew Berriman, David S. Roos, Jessica C. Kissinger, Guilherme Oliveira
Nucleic Acids Research, 2013
New frontiers in schistosoma genomics and transcriptomics
Laila A. Nahum, Marina M. Mourão, Guilherme Oliveira
Journal of Parasitology Research, 2012
The Schistosoma mansoni phylome: Using evolutionary genomics to gain insight into a parasite's biology
Larissa Lopes Silva, Marina Marcet-Houben, Laila Alves Nahum, Adhemar Zerlotini, Toni Gabaldón, Guilherme Oliveira
BMC Genomics, 2012
Factor VIII inhibitors in patients with congenital severe haemophilia A and its relation to genotype
S. F. Pio, M. C. Ozelo, A. dos Santos, B. V. de carvalho, C. Caram, D. Zouain, G. C. Oliveira, S. M. Rezende
Haemophilia, 2012
Automatic Assignment of Prokaryotic Genes to Functional Categories Using Literature Profiling
Raul Torrieri, Francislon S. Oliveira, Guilherme Oliveira, Roney S. Coimbra
Plos One, 2012
Molecular characterization of the hexose transporter gene in benznidazole resistant and susceptible populations of Trypanosoma cruzi
Paula F dos Santos, Jerônimo C Ruiz, Rodrigo P P Soares, Douglas S Moreira, Antônio M Rezende, Edson L Folador, Guilherme Oliveira, Alvaro J Romanha, Silvane M F Murta
Parasites and Vectors, 2012
Higher expression of CCL2, CCL4, CCL5, CCL21, and CXCL8 chemokines in the skin associated with parasite density in canine visceral leishmaniasis
Daniel Menezes-Souza, Renata Guerra-Sá, Cláudia Martins Carneiro, Juliana Vitoriano-Souza, Rodolfo Cordeiro Giunchetti, Andréa Teixeira-Carvalho, Denise Silveira-Lemos, Guilherme Corrêa Oliveira, Rodrigo Corrêa-Oliveira, Alexandre Barbosa Reis
Plos Neglected Tropical Diseases, 2012
Use of indicator kriging to investigate schistosomiasis in Minas Gerais State, Brazil
Ricardo J. P. S. Guimarães, Corina C. Freitas, Luciano V. Dutra, Carlos A. Felgueiras, Sandra C. Drummond, Sandra H. C. Tibiriçá, Guilherme Oliveira, Omar S. Carvalho
Journal of Tropical Medicine, 2012
Recent advances in Schistosoma genomics
M. M. MOURÃO, C. GRUNAU, P. T. LoVERDE, M. K. JONES, G. OLIVEIRA
Parasite Immunology, 2012
Utilizing environmental, socioeconomic data and GIS techniques to estimate the risk for ascariasis and trichuriasis in Minas Gerais, Brazil
Ronaldo G.C. Scholte, Corina C. Freitas, Luciano V. Dutra, Ricardo J.P.S. Guimaraes, Sandra C. Drummond, Guilherme Oliveira, Omar S. Carvalho
Acta Tropica, 2012
Whole-genome sequence of Schistosoma haematobium
Neil D Young, Aaron R Jex, Bo Li, Shiping Liu, Linfeng Yang, Zijun Xiong, Yingrui Li, Cinzia Cantacessi, Ross S Hall, Xun Xu, Fangyuan Chen, Xuan Wu, Adhemar Zerlotini, Guilherme Oliveira, Andreas Hofmann, Guojie Zhang, Xiaodong Fang, Yi Kang, Bronwyn E Campbell, Alex Loukas, Shoba Ranganathan, David Rollinson, Gabriel Rinaldi, Paul J Brindley, Huanming Yang, Jun Wang, Jian Wang, Robin B Gasser
Nature Genetics, 2012
Targeting schistosome histone modifying enzymes for drug development
R Pierce
Current Pharmaceutical Design, 2012
A systematically improved high quality genome and transcriptome of the human blood fluke Schistosoma mansoni
Anna V. Protasio, Isheng J. Tsai, Anne Babbage, Sarah Nichol, Martin Hunt, Martin A. Aslett, Nishadi De Silva, Giles S. Velarde, Tim J. C. Anderson, Richard C. Clark, Claire Davidson, Gary P. Dillon, Nancy E. Holroyd, Philip T. LoVerde, Christine Lloyd, Jacquelline McQuillan, Guilherme Oliveira, Thomas D. Otto, Sophia J. Parker-Manuel, Michael A. Quail, R. Alan Wilson, Adhemar Zerlotini, David W. Dunne, Matthew Berriman
Plos Neglected Tropical Diseases, 2012
A singular value decomposition approach for improved taxonomic classification of biological sequences
Anderson R Santos, Marcos A Santos, Jan Baumbach, John A McCulloch, Guilherme C Oliveira, Artur Silva, Anderson Miyoshi, Vasco Azevedo
BMC Genomics, 2011
Developmental regulation of genes encoding universal stress proteins in Schistosoma mansoni
Raphael D. Isokpehi, Ousman Mahmud, Andreas N. Mbah, Shaneka S. Simmons, Lívia Avelar, Rajendram V. Rajnarayanan, Udensi K. Udensi, Wellington K. Ayensu, Hari H. Cohly, Shyretha D. Brown, Centdrika R. Dates, Sonya D. Hentz, Shawntae J. Hughes, Dominique R. Smith-McInnis, Carvey O. Patterson, Jennifer N. Sims, Kelisha T. Turner, Baraka S. Williams, Matilda O. Johnson, Taiwo Adubi, Judith V. Mbuh, Chiaka I. Anumudu, Grace O. Adeoye, Bolaji N. Thomas, Oyekanmi Nashiru, Guilherme Oliveira
Gene Regulation and Systems Biology, 2011
An aberrant pattern for intron 1 inversion of factor VIII gene
S. F. PIO, G. C. OLIVEIRA, S. SOARES, S. M. REZENDE
Haemophilia, 2011
Eukaryotic Protein Kinases (ePKs) of the Helminth Parasite Schistosoma mansoni
Luiza F Andrade, Laila A Nahum, Lívia GA Avelar, Larissa L Silva, Adhemar Zerlotini, Jerônimo C Ruiz, Guilherme Oliveira
BMC Genomics, 2011
Evidence for reductive genome evolution and lateral acquisition of virulence functions in two corynebacterium pseudotuberculosis strains
Jerônimo C. Ruiz, Vívian D'Afonseca, Artur Silva, Amjad Ali, Anne C. Pinto, Anderson R. Santos, Aryanne A. M. C. Rocha, Débora O. Lopes, Fernanda A. Dorella, Luis G. C. Pacheco, Marcília P. Costa, Meritxell Z. Turk, Núbia Seyffert, Pablo M. R. O. Moraes, Siomar C. Soares, Sintia S. Almeida, Thiago L. P. Castro, Vinicius A. C. Abreu, Eva Trost, Jan Baumbach, Andreas Tauch, Maria Paula C. Schneider, John McCulloch, Louise T. Cerdeira, Rommel T. J. Ramos, Adhemar Zerlotini, Anderson Dominitini, Daniela M. Resende, Elisângela M. Coser, Luciana M. Oliveira, André L. Pedrosa, Carlos U. Vieira, Cláudia T. Guimarães, Daniela C. Bartholomeu, Diana M. Oliveira, Fabrício R. Santos, Élida Mara Rabelo, Francisco P. Lobo, Glória R. Franco, Ana Flávia Costa, Ieso M. Castro, Sílvia Regina Costa Dias, Jesus A. Ferro, José Miguel Ortega, Luciano V. Paiva, Luiz R. Goulart, Juliana Franco Almeida, Maria Inês T. Ferro, Newton P. Carneiro, Paula R. K. Falcão, Priscila Grynberg, Santuza M. R. Teixeira, Sérgio Brommonschenkel, Sérgio C. Oliveira, Roberto Meyer, Robert J. Moore, Anderson Miyoshi, Guilherme C. Oliveira, Vasco Azevedo
Plos One, 2011
Cytokine and transcription factor profiles in the skin of dogs naturally infected by Leishmania (Leishmania) chagasi presenting distinct cutaneous parasite density and clinical status
Daniel Menezes-Souza, Rodrigo Corrêa-Oliveira, Renata Guerra-Sá, Rodolfo Cordeiro Giunchetti, Andréa Teixeira-Carvalho, Olindo Assis Martins-Filho, Guilherme Corrêa Oliveira, Alexandre Barbosa Reis
Veterinary Parasitology, 2011
Detection of int1h-related inversion of the factor VIII gene
S. F. PIO, C. MÜHLE, G. C. DE OLIVEIRA, S. M. REZENDE
Haemophilia, 2011
Phred-Phrap package to analyses tools: A pipeline to facilitate population genetics re-sequencing studies
Moara Machado, Wagner CS Magalhães, Allan Sene, Bruno Araújo, Alessandra C Faria-Campos, Stephen J Chanock, Leandro Scott, Guilherme Oliveira, Eduardo Tarazona-Santos, Maira R Rodrigues
Investigative Genetics, 2011
Identification of Schistosoma mansoni microRNAs
Mariana C Simões, Jonathan Lee, Appolinaire Djikeng, Gustavo C Cerqueira, Adhemar Zerlotini, Rosiane A da Silva-Pereira, Andrew R Dalby, Philip LoVerde, Najib M El-Sayed, Guilherme Oliveira
BMC Genomics, 2011
Evolutionary histories of expanded peptidase families in Schistosoma mansoni
Larissa Lopes Silva, Marina Marcet-Houben, Adhemar Zerlotini, Toni Gabaldón, Guilherme Oliveira, Laila Alves Nahum
Memorias do Instituto Oswaldo Cruz, 2011
Disclosing ambiguous gene aliases by automatic literature profiling
Roney S Coimbra, Dana E Vanderwall, Guilherme C Oliveira
BMC Genomics, 2010
Xerostomia, hyposalivation and sialadenitis in patients with chronic hepatitis C are not associated with the detection of HCV RNA in saliva or salivary glands
Soraya de Mattos Camargo Grossmann, Rosângela Teixeira, Guilherme Corrêa de Oliveira, Frederico Omar Gleber-Netto, Flávio Marcos Gomes Araújo, Filipe Maia Araújo, Maria Auxiliadora Vieira do Carmo
Journal of Clinical Pathology, 2010
Detection of HCV RNA in saliva does not correlate with salivary flow or xerostomia in patients with chronic hepatitis C
Soraya de Mattos Camargo Grossmann, Rosângela Teixeira, Guilherme Corrêa de Oliveira, Maria Auxiliadora Vieira do Carmo
Oral Surgery Oral Medicine Oral Pathology Oral Radiology and Endodontology, 2010
Suppressing glucose transporter gene expression in schistosomes impairs parasite feeding and decreases survival in the mammalian host
Greice Krautz-Peterson, Mariana Simoes, Zahra Faghiri, David Ndegwa, Guilherme Oliveira, Charles B. Shoemaker, Patrick J. Skelly
Plos Pathogens, 2010
MST (Molecular Serotyping Tool): A program for computer-assisted molecular identification of Escherichia coli and Shigella O antigens
Roney S. Coimbra, François Artiguenave, Leandro S. R. Z. Jacques, Guilherme C. Oliveira
Journal of Clinical Microbiology, 2010
Survey of genome organization and gene content of Corynebacterium pseudotuberculosis
Vívian D’Afonseca, Francisco Prosdocimi, Fernanda A. Dorella, Luis Gustavo C. Pacheco, Pablo M. Moraes, Izabela Pena, Josè Miguel Ortega, Santuza Teixeira, Sérgio Costa Oliveira, Elisângela Monteiro Coser, Luciana Márcia Oliveira, Guilherme Corrêa de Oliveira, Roberto Meyer, Anderson Miyoshi, Vasco Azevedo
Microbiological Research, 2010
The contributions of the genome project to the study of schistosomiasis
Adhemar Zerlotini, Guilherme Oliveira
Memorias do Instituto Oswaldo Cruz, 2010
Ca88, a nuclear repetitive DNA sequence identified in Schistosoma mansoni, aids in the genotyping of nine Schistosoma species of medical and veterinary importance
Diana Bahia, Nilton B Rodrigues, Flávio Marcos G Araújo, Álvaro José Romanha, Jerônimo C Ruiz, David A Johnston, Guilherme Oliveira
Memorias do Instituto Oswaldo Cruz, 2010
Evaluation of a linear spectral mixture model and vegetation indices (NDVI and EVI) in a study of schistosomiasis mansoni and Biomphalaria glabrata distribution in the state of Minas Gerais, Brazil
Ricardo JPS Guimarães, Corina C Freitas, Luciano V Dutra, Ronaldo GC Scholte, Ronaldo S Amaral, Sandra C Drummond, Yosio E Shimabukuro, Guilherme C Oliveira, Omar S Carvalho
Memorias do Instituto Oswaldo Cruz, 2010
The Estrada Real project and endemic diseases: The case of schistosomiasis, geoprocessing and tourism
Omar S Carvalho, Ronaldo GC Scholte, Ricardo JPS Guimarães, Corina C Freitas, Sandra C Drummond, Ronaldo S Amaral, Luciano V Dutra, Guilherme Oliveira, Cristiano L Massara, Martin J Enk
Memorias do Instituto Oswaldo Cruz, 2010
A geoprocessing approach for studying and controlling schistosomiasis in the state of Minas Gerais, Brazil
Ricardo José de Paula Souza Guimarães, Corina Costa Freitas, Luciano Vieira Dutra, Ronaldo Guilherme Carvalho Scholte, Flávia Toledo Martins-Bedé, Fernanda Rodrigues Fonseca, Ronaldo Santos Amaral, Sandra Costa Drummond, Carlos Alberto Felgueiras, Guilherme Corrêa Oliveira, Omar Santos Carvalho
Memorias do Instituto Oswaldo Cruz, 2010
Inter- and intrapopulational genetic variability of Tityus serrulatus (Scorpiones, Buthidae)
Ronaldo G. Carvalho Scholte, Roberta Lima Caldeira, Mariana Crivellari Machado Simões, William H. Stutz, Larissa Lopes Silva, Omar dos Santos Carvalho, Guilherme Oliveira
Acta Tropica, 2009
Signal transduction regulates schistosome reproductive biology
Philip T LoVerde, Luiza F Andrade, Guilherme Oliveira
Current Opinion in Microbiology, 2009
The genome of the blood fluke Schistosoma mansoni
Matthew Berriman, Brian J. Haas, Philip T. LoVerde, R. Alan Wilson, Gary P. Dillon, Gustavo C. Cerqueira, Susan T. Mashiyama, Bissan Al-Lazikani, Luiza F. Andrade, Peter D. Ashton, Martin A. Aslett, Daniella C. Bartholomeu, Gaelle Blandin, Conor R. Caffrey, Avril Coghlan, Richard Coulson, Tim A. Day, Art Delcher, Ricardo DeMarco, Appolinaire Djikeng, Tina Eyre, John A. Gamble, Elodie Ghedin, Yong Gu, Christiane Hertz-Fowler, Hirohisha Hirai, Yuriko Hirai, Robin Houston, Alasdair Ivens, David A. Johnston, Daniela Lacerda, Camila D. Macedo, Paul McVeigh, Zemin Ning, Guilherme Oliveira, John P. Overington, Julian Parkhill, Mihaela Pertea, Raymond J. Pierce, Anna V. Protasio, Michael A. Quail, Marie-Adèle Rajandream, Jane Rogers, Mohammed Sajid, Steven L. Salzberg, Mario Stanke, Adrian R. Tivey, Owen White, David L. Williams, Jennifer Wortman, Wenjie Wu, Mostafa Zamanian, Adhemar Zerlotini, Claire M. Fraser-Liggett, Barclay G. Barrell, Najib M. El-Sayed
Nature, 2009
Sequence and structural analysis of the 5′ noncoding region of hepatitis C virus in patients with chronic infection
Flávio Marcos Gomes Araújo, Ariane Machado‐Lima, Alan Mitchell Durham, Rosangela Teixeira, Guilherme Oliveira
Journal of Medical Virology, 2009
Spatial distribution of Biomphalaria mollusks at São Francisco River Basin, Minas Gerais, Brazil, using geostatistical procedures
Ricardo J.P.S. Guimarães, Corina C. Freitas, Luciano V. Dutra, Carlos A. Felgueiras, Ana C.M. Moura, Ronaldo S. Amaral, Sandra C. Drummond, Ronaldo G.C. Scholte, Guilherme Oliveira, Omar S. Carvalho
Acta Tropica, 2009
A comparative chemogenomics strategy to predict potential drug targets in the metazoan pathogen, Schistosoma mansoni
Conor R. Caffrey, Andreas Rohwer, Frank Oellien, Richard J. Marhöfer, Simon Braschi, Guilherme Oliveira, James H. McKerrow, Paul M. Selzer
Plos One, 2009
SchistoDB: A Schistosoma mansoni genome resource
A. Zerlotini, M. Heiges, H. Wang, R. L. V. Moraes, A. J. Dominitini, J. C. Ruiz, J. C. Kissinger, G. Oliveira
Nucleic Acids Research, 2009
The molecular bases of the hemophilia A
Simone Ferreira Pio, Guilherme Corrêa de Oliveira, Suely Meireles Rezende
Revista Da Associacao Medica Brasileira, 2009
Brazilian studies on the genetics of Schistosoma mansoni
Rosana Gentile, Guilherme Oliveira
Acta Tropica, 2008
The Brazilian contribution to the study of the Schistosoma mansoni transcriptome
Guilherme Oliveira, Glória Franco, Sergio Verjovski-Almeida
Acta Tropica, 2008
Transmission control of schistosomiasis mansoni by introduction of a resistant strain of Biomphalaria tenagophila in areas where transmission is maintained by this species
Paulo Marcos Zech Coelho, Florence M. Rosa, Engels Maciel, Deborah A. Negrão-Correa, Omar S. Carvalho, Roberta L. Caldeira, Liana K. Jannotti-Passos, Luciano A. Moreira, Guilherme C. Oliveira, Horácio M.S. Teles
Acta Tropica, 2008
Physical localization of the retrotransposons Boudicca and Perere 03 in Schistosoma mansoni
C. L L. Valentim, M. S. Gomes, W. J. Jeremias, J. C. Cunha, G. C. Oliveira, A. C C. Botelho, P. F P. Pimenta, L. K. Janotti-Passos, R. Guerra-Sá, E. H. Babá
Journal of Parasitology, 2008
Brazillian Genome Sequencing Projects: State of the art
Eduardo Capanema Xavier, Beatriz Xavier Capanema, Jeronimo Ruiz, Guilherme Oliveira, Roberto Meyer, Vivian D'Afonseca, Anderson Miyoshi, Vasco Azevedo
Recent Patents on DNA and Gene Sequences, 2008
Squamous cell abnormalities in exfoliated cells from the urine of Schistosoma haematobium-infected adults in a rural fishing community in Nigeria.
O. Akinwale, G. Oliveira, M. Ajayi, D. Akande, S. Oyebadejo, K. Okereke
World Health Population, 2008
Genetic variability in the 5′ UTR and NS5A regions of hepatitis C virus RNA isolated from non-responding and responding patients with chronic HCV genotype 1 infection
Flávio MG Araújo, Ivan V Sonoda, Nilton B Rodrigues, Rosangela Teixeira, Rodrigo AF Redondo, Guilherme C Oliveira
Memorias do Instituto Oswaldo Cruz, 2008
The Schistosoma mansoni transcriptome: An update
Guilherme Oliveira
Experimental Parasitology, 2007
Schistosoma mansoni: Germ-line transformation approaches and actin-promoter analysis
Svenja Beckmann, Volker Wippersteg, Akram El-Bahay, Jörg Hirzmann, Guilherme Oliveira, Christoph G. Grevelding
Experimental Parasitology, 2007
Molecular analysis of SmFes, a tyrosine kinase of Schistosoma mansoni orthologous to the members of the Fes/Fps/Fer family
Fernanda Ludolf, Diana Bahia, Luiza F. Andrade, Alexandre Cousin, Monique Capron, Colette Dissous, Raymond J. Pierce, Guilherme Oliveira
Biochemical and Biophysical Research Communications, 2007
Single nucleotide polymorphisms identification in expressed genes of Schistosoma mansoni
Mariana Simões, Diana Bahia, Adhemar Zerlotini, Kleider Torres, François Artiguenave, Goran Neshich, Paula Kuser, Guilherme Oliveira
Molecular and Biochemical Parasitology, 2007
Schistosoma mansoni: Expression of Fes-like tyrosine kinase SmFes in the tegument and terebratorium suggests its involvement in host penetration
Diana Bahia, Renato A. Mortara, John R. Kusel, Luiza F. Andrade, Fernanda Ludolf, Paula R. Kuser, Lívia Avelar, Jacques Trolet, Colette Dissous, Raymond J. Pierce, Guilherme Oliveira
Experimental Parasitology, 2007
Microsatellite-enriched genomic libraries as a source of polymorphic loci for Schistosoma mansoni: Primer note
N. B. RODRIGUES, M. R. SILVA, M. M. PUCCI, D. J. MINCHELLA, R. SORENSEN, P. T. LOVERDE, A. J. ROMANHA, G. OLIVEIRA
Molecular Ecology Notes, 2007
Population genetic structure of Biomphalaria glabrata in a schistosomiasis-endemic region in Brazil
A. R. Wethington, M. Zavodna, M. K. Smith, G. Oliveira, F. Lewis, D. J. Minchella
Journal of Molluscan Studies, 2007
Antibodies from dogs with canine visceral leishmaniasis recognise two proteins from the saliva of Lutzomyia longipalpis
Diana Bahia, Nelder Figueiredo Gontijo, Ileana Rodríguez León, Jonas Perales, Marcos Horácio Pereira, Guilherme Oliveira, Rodrigo Corrêa-Oliveira, Alexandre Barbosa Reis
Parasitology Research, 2007
Analysis of the cytokine profile in spleen cells from dogs naturally infected by Leishmania chagasi
R.S. Lage, G.C. Oliveira, S.U. Busek, L.L. Guerra, R.C. Giunchetti, R. Corrêa-Oliveira, A.B. Reis
Veterinary Immunology and Immunopathology, 2007
Characterization of a clone from an adult worm cDNA library selected with anti-Schistosoma mansoni human antibodies dissociated from immune complexes: A preliminary report
Luiz Carlos Pedrosa Valli, Herminia Yohko Kanamura, Paulo Cesar Cotrim, Guilherme Correa Oliveira, Edward José de Oliveira
Revista do Instituto De Medicina Tropical De Sao Paulo, 2007
Genetic filtering and optimal sampling of Schistosoma mansoni populations
R. E. SORENSEN, N. B. RODRIGUES, G. OLIVEIRA, A. J. ROMANHA, D. J. MINCHELLA
Parasitology, 2006
The distribution of motor proteins in the muscles and flame cells of the Schistosoma mansoni miracidium and primary sporocyst
D. BAHIA, L. G. A. AVELAR, F. VIGOROSI, D. CIOLI, G. C. OLIVEIRA, R. A. MORTARA
Parasitology, 2006
SmPKC1, a new protein kinase C identified in the platyhelminth parasite Schistosoma mansoni
Diana Bahia, Lívia Avelar, Renato A. Mortara, Naji Khayath, Yutao Yan, Christophe Noël, Monique Capron, Colette Dissous, Raymond J. Pierce, Guilherme Oliveira
Biochemical and Biophysical Research Communications, 2006
Protein tyrosine kinases in Schistosoma mansoni
Diana Bahia, Luiza Freire Andrade, Fernanda Ludolf, Renato Arruda Mortara, Guilherme Oliveira
Memorias do Instituto Oswaldo Cruz, 2006
Neurological disease in HIV-infected patients in the era of highly active antiretroviral treatment: A Brazilian experience
Jacqueline Ferreira de Oliveira, Dirceu Bartolomeu Greco, Guilherme Correa Oliveira, Paulo Pereira Christo, Mark Drew Crosland Guimarães, Rodrigo Corrêa Oliveira
Revista Da Sociedade Brasileira De Medicina Tropical, 2006
Telomerase activity in the vaginal margins of radical hysterectomy in patients with carcinoma of the cervix: Correlation with histology and human papillomavirus
S.A. Triginelli, A.L. Silva-Filho, P. Traiman, F.M.U. Silva, M.C.G. Chaves-Dias, G.C. Oliveira, J.R. Cunha-Melo
International Journal of Gynecological Cancer, 2006
Production of full-length cDNA sequences by sequencing and analysis of expressed sequence tags from Schistosoma mansoni
Alessandra C Faria-Campos, Fernanda S Moratelli, Isabella K Mendes, Paula L Ortolani, Guilherme C Oliveira, Sérgio V A Campos, J Miguel Ortega, Glória R Franco
Memorias do Instituto Oswaldo Cruz, 2006
The Tropical Biominer Project: Mining old sources for new drugs
François Artiguenave, André Lins, Wesley Dias Maciel, Antonio Celso Caldeira Junior, Carla Nacif-Coelho, Maria Margarida Ribeiro De Souza Linhares, Guilherme Correa De Oliveira, Luis Humberto Rezende Barbosa, Júlio César Dias Lopes, Claudionor Nunes Coelho Junior
OMICS A Journal of Integrative Biology, 2005
Chagas' disease: TCRBV9 over-representation and sequence oligoclonality in the fine specificity of T lymphocytes in target tissues of damage
Valeria Tekiel, Guilherme C. Oliveira, Rodrigo Correa-Oliveira, Daniel Sánchez, Stella Maris González-Cappa
Acta Tropica, 2005
Detection of hepatitis C virus RNA in saliva samples from patients with seric anti-HCV antibodies
Patrícia L. Gonçalves, Carla B. Cunha, Solange C. U. Busek, Guilherme C. Oliveira, Rodrigo Ribeiro-Rodrigues, Fausto EL Pereira
Brazilian Journal of Infectious Diseases, 2005
Genome and genomics of schistosomes
Guilherme Oliveira, Nilton B Rodrigues, Alvaro J Romanha, Diana Bahia
Canadian Journal of Zoology, 2004
PCR-RFLP to identify Leishmania (Viannia) braziliensis and L. (Leishmania) amazonensis causing American cutaneous leishmaniasis
Ângela C Volpini, Valéria M.A Passos, Guilherme Correa Oliveira, Alvaro J Romanha
Acta Tropica, 2004
Biomphalaria tenagophila/Schistosoma mansoni interaction: Premises for a new approach to biological control of schistosomiasis
PMZ Coelho, OS Carvalho, ZA Andrade, RL Martins-Sousa, FM Rosa, L Barbosa, CAJ Pereira, RL Caldeira, LK Jannotti-Passos, ALB Godard, LA Moreira, GC Oliveira, GR Franco, HMS Teles, D Negrão-Corrêa
Memorias do Instituto Oswaldo Cruz, 2004
Molecular epidemiology of the hepatitis C virus in Brazil
Genetics and Molecular Research, 2003
Molecular characterization of an interleukin-4-inducing factor from Schistosoma mansoni eggs
Gabriele Schramm, Franco H. Falcone, Achim Gronow, Karin Haisch, Uwe Mamat, Michael J. Doenhoff, Guilherme Oliveira, Jürgen Galle, Clemens A. Dahinden, Helmut Haas
Journal of Biological Chemistry, 2003
Infection with Schistosoma mansoni correlates with altered immune responses to Ascaris lumbricoides and hookworm
Rodrigo Corrêa-Oliveira, Denise B Golgher, Guilherme C Oliveira, Omar S Carvalho, Cristiano L Massara, Iramaya R Caldas, Daniel G Colley, Giovanni Gazzinelli
Acta Tropica, 2002
Characterization of new Schistosoma mansoni microsatellite loci in sequences obtained from public DNA databases and microsatellite enriched genomic libraries
NB Rodrigues, PT LoVerde, AJ Romanha, G Oliveira
Memorias do Instituto Oswaldo Cruz, 2002
Sequencing of simple sequence repeat anchored polymerase chain reaction amplification products of Biomphalaria glabrata
Roberta L Caldeira, Omar S Carvalho, Regina CG Lage, Paula Cristina M Cardoso, Guilherme C Oliveira
Memorias do Instituto Oswaldo Cruz, 2002
Cis-acting elements, CArG-, E-, CCAAT- and TATA-boxes may be involved in sexually regulated gene transcription in Schistosoma mansoni
SU Busek, M Fantappie, LC Malaquias, RA Wilson, R Corrêa-Oliveira, GC Oliveira
Memorias do Instituto Oswaldo Cruz, 2002
Hepatitis C and hepatitis B virus infection in different hemodialysis units in Belo Horizonte, Minas Gerais, Brazil
Solange U Busek, Élio H Babá, Hélcio A Tavares Filho, Lermíno Pimenta, Abraão Salomão, Rodrigo Corrêa-Oliveira, Guilherme C Oliveira
Memorias do Instituto Oswaldo Cruz, 2002
Hepatitis C virus infection among Brazilian hemophiliacs: A virological, clinical and epidemiological study
R.A. Carmo, G.C. Oliveira, M.D.C. Guimarães, M.S. Oliveira, A.A. Lima, S.C. Buzek, R. Corrêa-Oliveira, M.O.C. Rocha
Brazilian Journal of Medical and Biological Research, 2002
Sm14 gene expression in different stages of the Schistosoma mansoni life cycle and immunolocalization of the Sm14 protein within the adult worm
C.F.A. Brito, G.C. Oliveira, S.C. Oliveira, M. Street, S. Riengrojpitak, R.A. Wilson, A.J.G. Simpson, R. Correa-Oliveira
Brazilian Journal of Medical and Biological Research, 2002
Mining the schistosome DNA sequence database
Guilherme Oliveira, David A. Johnston
Trends in Parasitology, 2001
Schistosoma gene discovery project update
Guilherme Oliveira
Trends in Parasitology, 2001
Hepatitis C virus genotypes in hemophiliacs in the state of Minas Gerais, Brazil
G.C. Oliveira, R.A. Carmo, M.O.C. Rocha, M.O. Silva, A.T. Lima, M.D.C. Guimarães, R. Corrêa‐Oliveira
Transfusion, 1999
Transcription levels of two actin genes (SmAct and SmAct2), cytochrome C oxidase subunit II (SmCOXII), triosephosphate isomerase (TPI), and a putative translation regulatory protein EIF-5 during the first seven days of in vitro development of Schistosoma mansoni schistosomula.
Guilherme Oliveira, Solange Busek, Rodrigo Corrêa-Oliveira
Memorias do Instituto Oswaldo Cruz, 1998
Cloning of two actin genes from Schistosoma mansoni
Guilherme C. Oliveira, W. Michael Kemp
Molecular and Biochemical Parasitology, 1995
The human immune response to defined immunogens of schistosoma mansoni: Elevated antibody levels to paramyosin in stool-negative individuals from two endemic areas in Brazil
R. Correa-Oliveira, E.J. Pearce, G.C. Oliveira, D.B. Golgher, N. Katz, L.G. Bahia, O.S. Carvalho, G. Gazzinelli, A. Sher
Transactions of the Royal Society of Tropical Medicine and Hygiene, 1989
Analysis of antibody responses of Schistosoma mansoni infected patients against schistosomal antigens.
Rodrigo Corrêa-Oliveira, Guilherme C. Oliveira, Denise B. Golgher, Iramaya R. C. Viana, Daniel G. Colley, Omar S. Carvalho, Roberto S. Rocha, Naftale Katz, Giovanni Gazzinelli
Memorias do Instituto Oswaldo Cruz, 1987

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