Rajesh Raju

@ciods.in

Professor & Director, Centre for Integrative Omics Data Science (CIODS)
Yenepoya University

Rajesh Raju


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https://researchid.co/rajesh_ciods

RESEARCH, TEACHING, or OTHER INTERESTS

Biotechnology, Structural Biology, Artificial Intelligence, Modeling and Simulation
186

Scopus Publications

11647

Scholar Citations

35

Scholar h-index

71

Scholar i10-index

Scopus Publications

RECENT SCHOLAR PUBLICATIONS

  • Exploring FABP4 as a Therapeutic Target in COVID-19 and the Role of Ocimum sanctum Linn. in Modulating Pathogenesis
    V Shaji, B Banjan, AJ Koshy, SS Raj, G Prasad, RJ R, R Raju, ...
    ChemistrySelect , 2026
    2026
  • Targeting BACE1 in Alzheimer’s Disease: Beyond Amyloidogenesis - An Expanding Landscape of Pathophysiological Roles and Therapeutic Challenges
    AG Nath, A Mohan, R Raju
    Letters in Applied NanoBioScience , 2026
    2026
  • ADAM9: An updated view of its biology and pathology
    A Sheela, A Mahin, S Subair, M Suresh, R Krishna, R Raju, S Soman
    Molecular Biology Reports , 2026
    2026
  • Integrative Phosphoproteomic Analysis Identifies Functional Roles of TRPM7 Phosphosites in Oncogenesis
    A Palollathil, A Mahin, AP Gopalakrishnan, A Sambreena, ...
    Frontiers in Bioinformatics , 2026
    2026
  • M2Viz: A Tool for Visualizing Genetic or Proteomic Modifications and Variants
    A Rafi, A Sambreena, M Nisar, R Raju, P Ramesh
    BMC Bioinformatics , 2026
    2026
  • Ensemble Learning-Guided Discovery of Anti-Tuberculosis Phytochemicals: Computational Prediction and Mechanistic Insights
    H Sajal, A Mohan, R Raju, AG Nath
    Journal of Computer-Aided Molecular Design , 2026
    2026
  • Site-Specific Phosphoproteomic Profiling of CAV1 Reveals Co-regulatory Kinase Networks in Cancer Signaling
    CE Vaz, M Suresh, L Dcunha, R Raju, S Kanekar
    International Journal of Molecular Sciences , 2026
    2026
  • Co-phosphoregulatory Network Underlying Functional Coherence of TLK1 and TLK2 Kinase Paralogs
    J Vijayan, S Subair, M Ahmed, AP Gopalakrishnan, A Sambreena, L John, ...
    International Journal of Molecular Sciences , 2026
    2026
  • The potential autophosphorylation sites secluded in the human kinome
    AP Gopalakrishnan, M Nisar, A Sambreena, RR Dev, PK Modi, S Soman, ...
    International Journal of Molecular Sciences , 2026
    2026
  • Meta-Cancer Phosphoproteomic Analysis Unveils Association of Tau Phosphosites with DNA Damage Response
    TR Poojari, L Dcunha, A Mahin, AP Gopalakrishnan, M Ahmed, ...
    Frontiers in Systems Biology , 2026
    2026
  • Phosphosite-Specific Co-Regulation Networks of MELK Kinase: Insights from Integrative Global Phosphoproteomics
    NA Khan, A Fahma, A Mahin, AP Gopalakrishnan, PB Shivamurthy, ...
    Journal of Genetic Engineering and Biotechnology , 2026
    2026
  • DNA barcoding, GC-MS analysis, and biological activity prediction of bioactive compounds in the seeds of Celastrus paniculatus: A source of lead compounds for neurological …
    AG Nadh, A Mohan, H Sajal, KR Arya, R Raju
    Journal of Natural Remedies , 2026
    2026
  • Exploring the Phosphoregulatory Network of Human Sucrose Non-fermenting 1-Related Kinase
    V Gopalakrishnan, A Fahma, AP Gopalakrishnan, S Subair, ...
    Biology , 2026
    2026
  • Differential phosphorylation of PHIP phosphopeptides with implications in insulin signaling
    A Sujina, A Fahma, S Subair, AP Gopalakrishnan, S Ummar, ...
    BMC Molecular and Cell Biology , 2026
    2026
  • Meta-Analysis of Cellular Phosphoproteome Datasets Exploring Phospho-signaling Associated With the RNA-Binding Protein RAVER1
    D Sanjeev, A Mahin, K Prabhakar, S Subair, PB Shivamurthy, ...
    Scientific Reports , 2026
    2026
  • The Phosphoproteomic Landscape of CD2AP: A Comprehensive Review of Kinase Networks and Disease Implications
    A Sheela, S Subair, AP Gopalakrishnan, A Palollathil, R Raju
    OMICS: A Journal of Integrative Biology , 2026
    2026
  • Structure-based identification of glucocerebrosidase allosteric stabilizing phytochemicals from Xylia xylocarpa for Parkinson’s disease through integrated LC–MS profiling and …
    I Ahammed, A Mohan, AG Nadh, R Raju, MG Ahmed
    Plants , 2026
    2026
  • Computational Phosphosite-Specific Network Analysis of YES1 Y426 Reveals Cancer-Associated Phosphorylation Patterns
    A Khanum, L Dcunha, S Subair, AP Gopalakrishnan, A Palollathil, R Raju
    Proteomes 14 (2), 17 , 2026
    2026
  • Integrative Phosphoproteomic Analysis Reveals Co-Regulatory Phosphorylation Networks of Rhotekin in Cancer Progression
    A Palollathil, A Mahin, AP Gopalakrishnan, A Sambreena, S Ummar, ...
    Discover Oncology , 2026
    2026
  • Computational Phosphoproteomic Insights into Predominant BRAF Phosphosites and Associated Regulatory Networks in Cancer
    L Dcunha, B Edakkad, L John, PB Shivamurthy, P Bera, D Das, R Raju, ...
    BBA - Proteins and Proteomics , 2026
    2026

MOST CITED SCHOLAR PUBLICATIONS

  • Human protein reference database—2009 update
    TS Keshava Prasad, R Goel, K Kandasamy, S Keerthikumar, S Kumar, ...
    Nucleic acids research 37 (suppl_1), D767-D772 , 2009
    2009
    Citations: 3881
  • A draft map of the human proteome
    MS Kim, SM Pinto, D Getnet, RS Nirujogi, SS Manda, R Chaerkady, ...
    Nature 509 (7502), 575-581 , 2014
    2014
    Citations: 2741
  • VEGF-A/VEGFR2 signaling network in endothelial cells relevant to angiogenesis
    CS Abhinand, R Raju, SJ Soumya, PS Arya, PR Sudhakaran
    Journal of Cell Communication and Signaling 10 (4), 347-354 , 2016
    2016
    Citations: 628
  • NetPath: a public resource of curated signal transduction pathways
    K Kandasamy, SS Mohan, R Raju, S Keerthikumar, GSS Kumar, ...
    Genome biology 11 (1), R3 , 2010
    2010
    Citations: 569
  • Plasma Proteome Database as a resource for proteomics research: 2014 update
    V Nanjappa, JK Thomas, A Marimuthu, B Muthusamy, A Radhakrishnan, ...
    Nucleic acids research 42 (D1), D959-D965 , 2014
    2014
    Citations: 413
  • A curated resource for phosphosite-specific signature analysis
    K Krug, P Mertins, B Zhang, P Hornbeck, R Raju, R Ahmad, M Szucs, ...
    Molecular & cellular proteomics 18 (3), 576-593 , 2019
    2019
    Citations: 388
  • Proteomic analysis of human osteoarthritis synovial fluid
    L Balakrishnan, RS Nirujogi, S Ahmad, M Bhattacharjee, SS Manda, ...
    Clinical proteomics 11 (1), 6 , 2014
    2014
    Citations: 164
  • A network map of IL-33 signaling pathway
    SM Pinto, Y Subbannayya, DAB Rex, R Raju, O Chatterjee, J Advani, ...
    Journal of cell communication and signaling 12 (3), 615-624 , 2018
    2018
    Citations: 160
  • A network map of FGF‐1/FGFR signaling system
    R Raju, SM Palapetta, VK Sandhya, A Sahu, A Alipoor, L Balakrishnan, ...
    Journal of signal transduction 2014 (1), 962962 , 2014
    2014
    Citations: 152
  • TSLP signaling pathway map: a platform for analysis of TSLP-mediated signaling
    J Zhong, J Sharma, R Raju, SM Palapetta, TSK Prasad, TC Huang, ...
    Database 2014, bau007 , 2014
    2014
    Citations: 149
  • Differential proteomic analysis of synovial fluid from rheumatoid arthritis and osteoarthritis patients
    L Balakrishnan, M Bhattacharjee, S Ahmad, RS Nirujogi, S Renuse, ...
    Clinical proteomics 11 (1), 1 , 2014
    2014
    Citations: 146
  • A network map of BDNF/TRKB and BDNF/p75NTR signaling system
    VK Sandhya, R Raju, R Verma, J Advani, R Sharma, A Radhakrishnan, ...
    Journal of cell communication and signaling 7 (4), 301-307 , 2013
    2013
    Citations: 109
  • A pathway map of prolactin signaling
    A Radhakrishnan, R Raju, N Tuladhar, T Subbannayya, JK Thomas, ...
    Journal of cell communication and signaling 6 (3), 169-173 , 2012
    2012
    Citations: 107
  • Activation of diverse signalling pathways by oncogenic PIK3CA mutations
    X Wu, S Renuse, NA Sahasrabuddhe, MS Zahari, R Chaerkady, MS Kim, ...
    Nature communications 5 (1), 4961 , 2014
    2014
    Citations: 94
  • Signaling network of Oncostatin M pathway
    G Dey, A Radhakrishnan, N Syed, JK Thomas, A Nadig, K Srikumar, ...
    Journal of Cell Communication and Signaling 7 (2), 103-108 , 2013
    2013
    Citations: 87
  • A multicellular signal transduction network of AGE/RAGE signaling
    S Soman, R Raju, VK Sandhya, J Advani, AA Khan, HC Harsha, ...
    Journal of cell communication and signaling 7 (1), 19-23 , 2013
    2013
    Citations: 83
  • Pancreatic Cancer Database: an integrative resource for pancreatic cancer
    JK Thomas, MS Kim, L Balakrishnan, V Nanjappa, R Raju, A Marimuthu, ...
    Cancer biology & therapy 15 (8), 963-967 , 2014
    2014
    Citations: 72
  • A comprehensive manually curated reaction map of RANKL/RANK-signaling pathway
    R Raju, L Balakrishnan, V Nanjappa, M Bhattacharjee, D Getnet, ...
    Database 2011, bar021 , 2011
    2011
    Citations: 65
  • A multi-omic analysis of human naïve CD4+ T cells
    BMC Systems Biology 9 (2015), 75 , 2015
    2015
    Citations: 57
  • RAPID: Resource of Asian primary immunodeficiency diseases
    S Keerthikumar, R Raju, K Kandasamy, A Hijikata, S Ramabadran, ...
    Nucleic acids research 37 (suppl_1), D863-D867 , 2009
    2009
    Citations: 57